*Supplementary material for the paper*

## Effects of the Time Points Measurement on the
Reconstruction of Gene Regulatory Networks

Wenying
Yan, Huangqion Zhu, Yang Yang, Jiajia Chen, Yuanyuan Zhang and Bairong Shen*

Center
for Systems Biology, Postbox 206, Soochow University,
1st Shizi street,,
Suzhou 215006, Jiangsu, China

E-mail:
bairong.shen(at)suda.edu.cn

^{*}corresponding author

**All
the related R scripts used in this article are listed as follows.**

** **

1. Reconstruction of the the
Arabidopsis gene regulatory networks
by R package G1DBN.

(Network-reconstruction.R)

* *

2.
Network
Structure Analysis: diameter, average path length, Centralization, Clustering
coefficient,* etc.*

* *(Network-analysis-1.R)

3.
Calculation
of sensitivity, precision and F_measure.

(Network-analysis-2.R
)

4.
Identification
of the edges (gene regulations) which exists in more than one networks and
calculation of the number of overlapping edges among different networks.

(Network-analysis-3.R)