The search result for the key word "NA"

A total of 414 results found based on your keywords
Recommendation ID Data Information Model Information Application Information Reference
Rank Total_Score Model_ID Dataset_Name Element_type Data_features Model_name Algorithm_name Prediction_type Code_source Study_types Disease_name Target_name Drug_name Interaction_type Recommended_Number PMID Journal Publication_Year
1 91.9 2042 NA Drug, Disease, Target Drug: SMILES, Target: the amino acid sequences VGAEDTI Random Forest (RF),Variational Graph AutoEncoder (VGAE),Graph AutoEncoder (GAE) Drug Target Interaction (DTI) https://github.com/FengYinFei/VGAEDTI Case studies NA NA NA Drug target interaction Top 15 drugs 37415176 BMC Bioinformatics 2023
2 86.05 2168 Bdataset Drug, Disease, Target Drug: SMILES, Disease: MesH, Target: Sequence HMLKGAT Graph Attention Network (The principle of three degrees influence),Multi-Kernel Learning Method (Gaussian kernel function,Cosine similarity function),Neural network Drug Disease Association (DDA) https://github.com/LDD-0914/HMLKGAT.git Case studies NA NA NA Drug disease interaction Top 5 diseases 38051617 IEEE/ACM Trans Comput Biol Bioinform 2024
2 86.05 2168 Hetero-A Drug, Disease, Target NA HMLKGAT Graph Attention Network (The principle of three degrees influence),Multi-Kernel Learning Method (Gaussian kernel function,Cosine similarity function),Neural network Drug Disease Association (DDA) https://github.com/LDD-0914/HMLKGAT.git Case studies NA NA NA Drug disease interaction Top 5 diseases 38051617 IEEE/ACM Trans Comput Biol Bioinform 2024
3 85.6 2118 DTINet Drug, Disease, Target Drug: SMILES(Drugbank), Target: amino acid sequences(HPRD) SATS Graph Neural Network (GNN) Drug Target Interaction (DTI) NA Case studies NA NA NA Drug target interaction Top 30 drugs 37672364 IEEE J Biomed Health Inform 2023
4 85.4 815 Cdataset Drug, Disease, Target Drug: SMILES, Disease: MeSH OMC Overlap Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/OMC Case studies NA NA Doxorubicin NA Top 5 diseases 31869322 PLoS Comput Biol 2019
4 85.4 815 NA Drug, Disease, Target Drug: SMILES, Disease: MeSH OMC Overlap Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/OMC Case studies NA NA Doxorubicin NA Top 5 diseases 31869322 PLoS Comput Biol 2019
4 85.4 815 Cdataset Drug, Disease, Target Drug: SMILES, Disease: MeSH OMC Overlap Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/OMC Case studies NA NA Flecainide NA Top 5 diseases 31869322 PLoS Comput Biol 2019
4 85.4 815 NA Drug, Disease, Target Drug: SMILES, Disease: MeSH OMC Overlap Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/OMC Case studies NA NA Flecainide NA Top 5 diseases 31869322 PLoS Comput Biol 2019
4 85.4 815 PREDICT (Fdataset) Drug, Disease, Target Drug: SMILES, Disease: MeSH OMC Overlap Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/OMC Case studies NA NA Doxorubicin NA Top 5 diseases 31869322 PLoS Comput Biol 2019
4 85.4 815 PREDICT (Fdataset) Drug, Disease, Target Drug: SMILES, Disease: MeSH OMC Overlap Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/OMC Case studies NA NA Flecainide NA Top 5 diseases 31869322 PLoS Comput Biol 2019
4 85.4 815 Cdataset Drug, Disease, Target Drug: SMILES, Disease: MeSH OMC Overlap Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/OMC Case studies NA NA Levodopa NA Top 5 diseases 31869322 PLoS Comput Biol 2019
4 85.4 815 NA Drug, Disease, Target Drug: SMILES, Disease: MeSH OMC Overlap Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/OMC Case studies NA NA Levodopa NA Top 5 diseases 31869322 PLoS Comput Biol 2019
4 85.4 815 PREDICT (Fdataset) Drug, Disease, Target Drug: SMILES, Disease: MeSH OMC Overlap Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/OMC Case studies NA NA Levodopa NA Top 5 diseases 31869322 PLoS Comput Biol 2019
5 85 1566 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Gabapentin NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Cdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Dexamethasone NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Cdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Amantadine NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Cdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Flecainide NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Frovatriptan NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Doxorubicin NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Cdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Gabapentin NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Dexamethasone NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Amantadine NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Cdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Frovatriptan NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Cdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Doxorubicin NA Top 20 diseases 34610633 Mol Omics 2021
5 85 1566 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH BGMSDDA K nearest known neighbors (WKNKN) Drug Disease Association (DDA) https://github.com/kk-2010000/BGMSDDA Case studies NA NA Flecainide NA Top 20 diseases 34610633 Mol Omics 2021
6 84.04 289 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Levodopa NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 DNdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Flecainide NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Doxorubicin NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Cabergoline NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Flecainide NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 DNdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Doxorubicin NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Amantadine NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Levodopa NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Doxorubicin NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 DNdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Amantadine NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Cabergoline NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 DNdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Levodopa NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Flecainide NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Amantadine NA Top 5 diseases 27153662 Bioinformatics 2016
6 84.04 289 DNdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms MBiRW Random Walk Drug Disease Association (DDA) http://github.com//bioinfomaticsCSU/MBiRW Case studies NA NA Cabergoline NA Top 5 diseases 27153662 Bioinformatics 2016
7 83.8 893 PREDICT (Fdataset) Drug, Disease Drug: SMILES, Disease: MeSH HNet-DNN Deep Neural Network (DNN) Drug Disease Association (DDA) https://github.com/hliu2016/HNet-DNN Case studies NA NA Enalapril NA Top 15 diseases 32118415 J Chem Inf Model 2020
7 83.8 893 Cdataset Drug, Disease Drug: SMILES, Disease: MeSH HNet-DNN Deep Neural Network (DNN) Drug Disease Association (DDA) https://github.com/hliu2016/HNet-DNN Case studies NA NA Enalapril NA Top 15 diseases 32118415 J Chem Inf Model 2020
8 83 1613 NA Drug, Disease Drug: Chemical substructures, the target domains and the gene ontology annotations of target target, Disease: MeSH CTST Graph Convolutional Network (GCN) Drug Disease Association (DDA) NA Case studies NA NA Chloroquine NA Top 10 diseases 34850815 Brief Bioinform 2022
8 83 1613 NA Drug, Disease Drug: Chemical substructures, the target domains and the gene ontology annotations of target target, Disease: MeSH CTST Graph Convolutional Network (GCN) Drug Disease Association (DDA) NA Case studies NA NA Flurbiprofen NA Top 10 diseases 34850815 Brief Bioinform 2022
8 83 1613 NA Drug, Disease Drug: Chemical substructures, the target domains and the gene ontology annotations of target target, Disease: MeSH CTST Graph Convolutional Network (GCN) Drug Disease Association (DDA) NA Case studies NA NA Metoprolol NA Top 10 diseases 34850815 Brief Bioinform 2022
8 83 1613 NA Drug, Disease Drug: Chemical substructures, the target domains and the gene ontology annotations of target target, Disease: MeSH CTST Graph Convolutional Network (GCN) Drug Disease Association (DDA) NA Case studies NA NA Propranolol NA Top 10 diseases 34850815 Brief Bioinform 2022
8 83 1613 NA Drug, Disease Drug: Chemical substructures, the target domains and the gene ontology annotations of target target, Disease: MeSH CTST Graph Convolutional Network (GCN) Drug Disease Association (DDA) NA Case studies NA NA Aripiprazole NA Top 10 diseases 34850815 Brief Bioinform 2022
9 82.7 1848 Bdataset Drug, Disease, Target Drug: SMILES, Disease: MeSH REDDA (Relations-Enhanced Drug-Disease Association prediction) Heterogeneous Graph Convolutional Network (HGCN) Drug Disease Association (DDA) https://github.com/gu-yaowen/REDDA Case studies NA NA Dexamethasone NA Top 10 diseases 36182762 Comput Biol Med 2022
9 82.7 1848 Bdataset Drug, Disease, Target Drug: SMILES, Disease: MeSH REDDA (Relations-Enhanced Drug-Disease Association prediction) Heterogeneous Graph Convolutional Network (HGCN) Drug Disease Association (DDA) https://github.com/gu-yaowen/REDDA Case studies NA NA Ifosfamide NA Top 10 diseases 36182762 Comput Biol Med 2022
9 82.7 1848 NA Drug, Disease, Target, Gene, Pathway Drug: SMILES, Disease: MeSH REDDA (Relations-Enhanced Drug-Disease Association prediction) Heterogeneous Graph Convolutional Network (HGCN) Drug Disease Association (DDA) https://github.com/gu-yaowen/REDDA Case studies NA NA Dexamethasone NA Top 10 diseases 36182762 Comput Biol Med 2022
9 82.7 1848 NA Drug, Disease, Target, Gene, Pathway Drug: SMILES, Disease: MeSH REDDA (Relations-Enhanced Drug-Disease Association prediction) Heterogeneous Graph Convolutional Network (HGCN) Drug Disease Association (DDA) https://github.com/gu-yaowen/REDDA Case studies NA NA Ifosfamide NA Top 10 diseases 36182762 Comput Biol Med 2022
10 81.9 1643 DNdataset Drug, Disease Drug: Hashed fingerprints, Disease: MeSH springD²A Encoder,Neural networks Drug Disease Association (DDA) https://github.com/wangyuanhao/springD2A Case studies NA NA Fenoldopam NA Top 10 diseases 34864881 Bioinformatics 2022
10 81.9 1643 Fdataset Drug, Disease Drug: Hashed fingerprints, Disease: MeSH springD²A Encoder,Neural networks Drug Disease Association (DDA) https://github.com/wangyuanhao/springD2A Case studies NA NA Indomethacin NA Top 10 diseases 34864881 Bioinformatics 2022
10 81.9 1643 DNdataset Drug, Disease Drug: Hashed fingerprints, Disease: MeSH springD²A Encoder,Neural networks Drug Disease Association (DDA) https://github.com/wangyuanhao/springD2A Case studies NA NA Diltiazem NA Top 10 diseases 34864881 Bioinformatics 2022
10 81.9 1643 Cdataset Drug, Disease Drug: Hashed fingerprints, Disease: MeSH springD²A Encoder,Neural networks Drug Disease Association (DDA) https://github.com/wangyuanhao/springD2A Case studies NA NA Fenoldopam NA Top 10 diseases 34864881 Bioinformatics 2022
10 81.9 1643 Cdataset Drug, Disease Drug: Hashed fingerprints, Disease: MeSH springD²A Encoder,Neural networks Drug Disease Association (DDA) https://github.com/wangyuanhao/springD2A Case studies NA NA Diltiazem NA Top 10 diseases 34864881 Bioinformatics 2022
10 81.9 1643 Fdataset Drug, Disease Drug: Hashed fingerprints, Disease: MeSH springD²A Encoder,Neural networks Drug Disease Association (DDA) https://github.com/wangyuanhao/springD2A Case studies NA NA Fenoldopam NA Top 10 diseases 34864881 Bioinformatics 2022
10 81.9 1643 DNdataset Drug, Disease Drug: Hashed fingerprints, Disease: MeSH springD²A Encoder,Neural networks Drug Disease Association (DDA) https://github.com/wangyuanhao/springD2A Case studies NA NA Indomethacin NA Top 10 diseases 34864881 Bioinformatics 2022
10 81.9 1643 Cdataset Drug, Disease Drug: Hashed fingerprints, Disease: MeSH springD²A Encoder,Neural networks Drug Disease Association (DDA) https://github.com/wangyuanhao/springD2A Case studies NA NA Indomethacin NA Top 10 diseases 34864881 Bioinformatics 2022
10 81.9 1643 Fdataset Drug, Disease Drug: Hashed fingerprints, Disease: MeSH springD²A Encoder,Neural networks Drug Disease Association (DDA) https://github.com/wangyuanhao/springD2A Case studies NA NA Diltiazem NA Top 10 diseases 34864881 Bioinformatics 2022
11 81.88 1407 Fdataset Drug, Disease Drug: SMILES, ATC, side-effect; Disease: the medical subject headings vocabulary, DO. MSBMF Matrix Factorization Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/MSBMF Case studies NA NA Vincristine NA Top 10 diseases 33147616 Brief Bioinform 2021
11 81.88 1407 Fdataset Drug, Disease Drug: SMILES, ATC, side-effect; Disease: the medical subject headings vocabulary, DO. MSBMF Matrix Factorization Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/MSBMF Case studies NA NA Methotrexate NA Top 10 diseases 33147616 Brief Bioinform 2021
11 81.88 1407 Fdataset Drug, Disease Drug: SMILES, ATC, side-effect; Disease: the medical subject headings vocabulary, DO. MSBMF Matrix Factorization Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/MSBMF Case studies NA NA Risperidone NA Top 10 diseases 33147616 Brief Bioinform 2021
11 81.88 1407 Fdataset Drug, Disease Drug: SMILES, ATC, side-effect; Disease: the medical subject headings vocabulary, DO. MSBMF Matrix Factorization Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/MSBMF Case studies NA NA Doxorubicin NA Top 10 diseases 33147616 Brief Bioinform 2021
11 81.88 1407 Fdataset Drug, Disease Drug: SMILES, ATC, side-effect; Disease: the medical subject headings vocabulary, DO. MSBMF Matrix Factorization Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/MSBMF Case studies NA NA Gemcitabine NA Top 10 diseases 33147616 Brief Bioinform 2021
12 81.7 2036 DTPKS Drug, Target Drug: 2D molecular graphs Target: amino acid sequences (AAS) MDTips Multi Layer Perception (MLP) Drug Target Interaction (DTI) https://github.com/XiaoqiongXia/MDTips Case studies NA NA Melphalan NA Top 30 diseases 37379157 Bioinformatics 2023
13 81.4 1860 Cdataset Drug, Disease Drug: SMILES, Disease: MeSH EMPHCN (Enhanced Message Passing and Hypergraph Convolutional Networks) Graph Convolutional Network (GCN) Drug Disease Association (DDA) https://github.com/hwh7301/EMPHCN Case studies NA NA Felodipine NA Top 5 diseases 36359016 Biomolecules 2022
13 81.4 1718 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH MLMC Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/MLMC Case studies NA NA Gemcitabine NA Top 5 diseases 35289352 Brief Bioinform 2022
13 81.4 1860 T1 Drug, Disease, Target Drug: SMILES, Disease: MeSH EMPHCN (Enhanced Message Passing and Hypergraph Convolutional Networks) Graph Convolutional Network (GCN) Drug Disease Association (DDA) https://github.com/hwh7301/EMPHCN Case studies NA NA Felodipine NA Top 5 diseases 36359016 Biomolecules 2022
13 81.4 1718 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH MLMC Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/MLMC Case studies NA NA Methotrexate NA Top 5 diseases 35289352 Brief Bioinform 2022
13 81.4 1860 T2 Drug, Disease, Target Drug: SMILES, Disease: MeSH EMPHCN (Enhanced Message Passing and Hypergraph Convolutional Networks) Graph Convolutional Network (GCN) Drug Disease Association (DDA) https://github.com/hwh7301/EMPHCN Case studies NA NA Felodipine NA Top 5 diseases 36359016 Biomolecules 2022
13 81.4 1718 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH MLMC Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/MLMC Case studies NA NA Leucovorin NA Top 5 diseases 35289352 Brief Bioinform 2022
13 81.4 1718 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH MLMC Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/MLMC Case studies NA NA Doxorubicin NA Top 5 diseases 35289352 Brief Bioinform 2022
13 81.4 1860 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH EMPHCN (Enhanced Message Passing and Hypergraph Convolutional Networks) Graph Convolutional Network (GCN) Drug Disease Association (DDA) https://github.com/hwh7301/EMPHCN Case studies NA NA Felodipine NA Top 5 diseases 36359016 Biomolecules 2022
14 80.7 1994 KIBA Drug, Target Drug: SMILES, Target: the amino acid sequences MSGNN-DTA Graph Neural Network (GNN) Drug Target binding Affinity (DTA) https://github.com/songxuanmo/MSGNN-DTA Case studies NA Epidermal Growth Factor Receptor (EGFR) NA NA Top 11 drugs 37176031 Int J Mol Sci 2023
14 80.7 1994 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences MSGNN-DTA Graph Neural Network (GNN) Drug Target binding Affinity (DTA) https://github.com/songxuanmo/MSGNN-DTA Case studies NA Epidermal Growth Factor Receptor (EGFR) NA NA Top 11 drugs 37176031 Int J Mol Sci 2023
15 80.6 895 PREDICT (Fdataset) Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Citalopram NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Fluconazole NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Citalopram NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 Cdataset Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Ziprasidone NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 PREDICT (Fdataset) Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Fluconazole NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 PREDICT (Fdataset) Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Imatinib NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Imatinib NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 Cdataset Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Warfarin NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 2071 DTINet Drug, Disease, Target, Side-effect Drug: SMILES, Target: the amino acid sequences SHGCL-DTI Heterogeneous Graph Convolutional Network (HGCN) Drug Target Interaction (DTI) https://github.com/TOJSSE-iData/SHGCL-DTI Case studies NA ADRA1B, CHRM1, CHRM2, CHRM3, HTR1A, HTR2B, HTR2C, GABRA4, OPRD1, SLC6A4 NA NA Top 20 drugs 37421738 Comput Biol Med 2023
15 80.6 895 Cdataset Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Chloroquine NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 Cdataset Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Citalopram NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 PREDICT (Fdataset) Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Ziprasidone NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Ziprasidone NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 Cdataset Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Fluconazole NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Chloroquine NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 Cdataset Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Imatinib NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 PREDICT (Fdataset) Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Warfarin NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 PREDICT (Fdataset) Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Chloroquine NA Top 5 diseases 31999326 Bioinformatics 2020
15 80.6 895 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye DRIMC (Drug repositioning approach by using Bayesian inductive matrix completion) Bayesian inductive matrix Drug Disease Association (DDA) https://github.com/linwang1982/DRIMC Case studies NA NA Warfarin NA Top 5 diseases 31999326 Bioinformatics 2020
16 80.5 393 NA Drug, Disease, Target , Side-effect Drug: chmical structure, Target: genome sequences DTINet Random Walk with Restart (RWR) Drug Target Interaction (DTI) https://github.com/luoyunan/DTINet Case studies NA COX proteins NA NA 3 drugs 28924171 Nat Commun 2017
17 80.3 1892 Yamanishi_IC Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:775 (calcium voltage-gated channel subunit alpha1 C) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_GPCR Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA NA Nisoldipine NA Top 20 targets 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 HGBI Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA NA Nisoldipine NA Top 20 targets 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_NR Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:779 (calcium voltage-gated channel subunit alpha1 S) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 DrugBank Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA NA Nisoldipine NA Top 20 targets 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_IC Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:779 (calcium voltage-gated channel subunit alpha1 S) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_GPCR Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:775 (calcium voltage-gated channel subunit alpha1 C) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_E Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA NA Nisoldipine NA Top 20 targets 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 HGBI Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:775 (calcium voltage-gated channel subunit alpha1 C) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 DrugBank Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:775 (calcium voltage-gated channel subunit alpha1 C) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_NR Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA NA Nisoldipine NA Top 20 targets 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_GPCR Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:779 (calcium voltage-gated channel subunit alpha1 S) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_E Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:775 (calcium voltage-gated channel subunit alpha1 C) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 HGBI Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:779 (calcium voltage-gated channel subunit alpha1 S) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_E Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:779 (calcium voltage-gated channel subunit alpha1 S) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 DrugBank Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:779 (calcium voltage-gated channel subunit alpha1 S) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_NR Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA hsa:775 (calcium voltage-gated channel subunit alpha1 C) NA NA Top 20 drugs 36301791 IEEE J Biomed Health Inform 2023
17 80.3 1892 Yamanishi_IC Drug, Target Drug: chemical structure information, Target: target sequence PPAEDTI Deep Autoencoder Drug Target Interaction (DTI) https://github.com/LiYuechao1998/PPAEDTI Case studies NA NA Nisoldipine NA Top 20 targets 36301791 IEEE J Biomed Health Inform 2023
18 79.8 486 DNdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Zoledronic acid NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Zoledronic acid NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Zoledronic acid NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 DNdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Risperidone NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Risperidone NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Risperidone NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 DNdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Prednisolone NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Prednisolone NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Prednisolone NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Paclitaxel NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 DNdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Paclitaxel NA Top 5 diseases 29365057 Bioinformatics 2018
18 79.8 486 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms DRRS (Drug Repositioning Recommendation System) Singular Value Thresholding (SVT) Drug Disease Association (DDA) NA Case studies NA NA Paclitaxel NA Top 5 diseases 29365057 Bioinformatics 2018
19 79.71428571 687 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms NA Random Forest (RF) Drug Disease Association (DDA) NA Case studies NA NA Cortisol NA Top 2 drugs 31138103 BMC Bioinformatics 2019
19 79.71428571 687 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms NA Random Forest (RF) Drug Disease Association (DDA) NA Case studies NA NA Irinotecan NA Top 1 drug 31138103 BMC Bioinformatics 2019
19 79.71428571 687 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms NA Random Forest (RF) Drug Disease Association (DDA) NA Case studies NA NA Salicylic acid NA Top 1 drug 31138103 BMC Bioinformatics 2019
19 79.71428571 687 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms NA Random Forest (RF) Drug Disease Association (DDA) NA Case studies NA NA Ephedrine NA Top 2 drugs 31138103 BMC Bioinformatics 2019
19 79.71428571 687 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms NA Random Forest (RF) Drug Disease Association (DDA) NA Case studies NA NA Podophyllotoxin NA Top 1 drug 31138103 BMC Bioinformatics 2019
19 79.71428571 687 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms NA Random Forest (RF) Drug Disease Association (DDA) NA Case studies NA NA (-)-Prostaglandin E1 NA Top 1 drug 31138103 BMC Bioinformatics 2019
19 79.71428571 687 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms NA Random Forest (RF) Drug Disease Association (DDA) NA Case studies NA NA Testosterone NA Top 3 drugs 31138103 BMC Bioinformatics 2019
20 78.3 1615 NA Drug, Disease, Target Drug: SMILES, Disease: MeSH HINGRL Random Forest (RF) Drug Disease Association (DDA) https://github.com/stevejobws/HINGRL Case studies NA Clozapine NA NA Top 10 diseases 34891172 Brief Bioinform 2022
20 78.3 1615 Fdataset Drug, Disease Drug: SMILES, Disease: MeSH HINGRL Random Forest (RF) Drug Disease Association (DDA) https://github.com/stevejobws/HINGRL Case studies NA Clozapine NA NA Top 10 diseases 34891172 Brief Bioinform 2022
21 77.875 509 NA Drug, Disease Drug: substructures, Disease: MeSH NTSIM (Network Topological Similarity-based Inference Method) Label Propagation Drug Disease Association (DDA) NA Case studies NA NA Risperidone NA Top 10 diseases 29879508 Methods 2018
21 77.875 509 Fdataset Drug, Disease Drug: substructures, Disease: MeSH NTSIM (Network Topological Similarity-based Inference Method) Label Propagation Drug Disease Association (DDA) NA Case studies NA NA Risperidone NA Top 10 diseases 29879508 Methods 2018
21 77.875 509 TL-HGBI Drug, Target Drug: substructures, Disease: MeSH NTSIM (Network Topological Similarity-based Inference Method) Label Propagation Drug Disease Association (DDA) NA Case studies NA NA Risperidone NA Top 10 diseases 29879508 Methods 2018
21 77.875 509 LRSSL Drug, Disease Drug: substructures, Disease: MeSH NTSIM (Network Topological Similarity-based Inference Method) Label Propagation Drug Disease Association (DDA) NA Case studies NA NA Risperidone NA Top 10 diseases 29879508 Methods 2018
22 77.76 766 LRSSL Drug, Disease, Side-effect Drug: chemical substructure, domains of target target, GO terms of drug target, Disease associated with the interested Drug, Drug side-effect; Disease: MeSH, Disease ontology DisDrugPred Non-negative Matrix Factorization (NMF) Drug Disease Association (DDA) https://github.com/pingxuan-hlju/DisDrugPred Case studies NA NA Ciprofloxacin NA Top 10 diseases 30865257 Bioinformatics 2019
22 77.76 766 LRSSL Drug, Disease, Side-effect Drug: chemical substructure, domains of target target, GO terms of drug target, Disease associated with the interested Drug, Drug side-effect; Disease: MeSH, Disease ontology DisDrugPred Non-negative Matrix Factorization (NMF) Drug Disease Association (DDA) https://github.com/pingxuan-hlju/DisDrugPred Case studies NA NA Cefotaxime NA Top 10 diseases 30865257 Bioinformatics 2019
22 77.76 766 LRSSL Drug, Disease, Side-effect Drug: chemical substructure, domains of target target, GO terms of drug target, Disease associated with the interested Drug, Drug side-effect; Disease: MeSH, Disease ontology DisDrugPred Non-negative Matrix Factorization (NMF) Drug Disease Association (DDA) https://github.com/pingxuan-hlju/DisDrugPred Case studies NA NA Clonidine NA Top 10 diseases 30865257 Bioinformatics 2019
22 77.76 766 LRSSL Drug, Disease, Side-effect Drug: chemical substructure, domains of target target, GO terms of drug target, Disease associated with the interested Drug, Drug side-effect; Disease: MeSH, Disease ontology DisDrugPred Non-negative Matrix Factorization (NMF) Drug Disease Association (DDA) https://github.com/pingxuan-hlju/DisDrugPred Case studies NA NA Ampicillin NA Top 10 diseases 30865257 Bioinformatics 2019
22 77.76 766 LRSSL Drug, Disease, Side-effect Drug: chemical substructure, domains of target target, GO terms of drug target, Disease associated with the interested Drug, Drug side-effect; Disease: MeSH, Disease ontology DisDrugPred Non-negative Matrix Factorization (NMF) Drug Disease Association (DDA) https://github.com/pingxuan-hlju/DisDrugPred Case studies NA NA Etoposide NA Top 10 diseases 30865257 Bioinformatics 2019
23 77.4 607 DTINet Drug, Disease, Target , Side-effect Drug: Morgan fingerprints, Target: target sequence NeoDTI (NEural integration of neighbOr information for DTI prediction) Matrix Factorization Drug Target Interaction (DTI) https://github.com/FangpingWan/NeoDTI Case studies NA NA NA Drug disease interaction Top 20 predictions 30561548 Bioinformatics 2019
24 77.35 1367 Cdataset Drug, Disease Drug: SMILES, Disease: Phenotype DDIPred Deep gated recurrent units model Drug Disease Association (DDA) https://github.com/haichengyi/DDIPre Case studies NA NA Dexamethasone NA Top 15 diseases 34074242 BMC Bioinformatics 2021
24 77.35 1367 Fdataset Drug, Disease Drug: SMILES, Disease: Phenotype DDIPred Deep gated recurrent units model Drug Disease Association (DDA) https://github.com/haichengyi/DDIPre Case studies NA NA Zoledronic acid NA Top 10 diseases 34074242 BMC Bioinformatics 2021
24 77.35 1367 Fdataset Drug, Disease Drug: SMILES, Disease: Phenotype DDIPred Deep gated recurrent units model Drug Disease Association (DDA) https://github.com/haichengyi/DDIPre Case studies NA NA Dexamethasone NA Top 15 diseases 34074242 BMC Bioinformatics 2021
24 77.35 1367 Cdataset Drug, Disease Drug: SMILES, Disease: Phenotype DDIPred Deep gated recurrent units model Drug Disease Association (DDA) https://github.com/haichengyi/DDIPre Case studies NA NA Zoledronic acid NA Top 10 diseases 34074242 BMC Bioinformatics 2021
25 76.8 720 Cdataset Drug, Disease NA BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Doxorubicin NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Doxorubicin NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 DNdataset Drug, Disease NA BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Doxorubicin NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 DNdataset Drug, Disease NA BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Amantadine NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 Cdataset Drug, Disease NA BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Amantadine NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Amantadine NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 DNdataset Drug, Disease NA BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Flecainide NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 Cdataset Drug, Disease NA BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Flecainide NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Flecainide NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Levodopa NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 DNdataset Drug, Disease NA BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Levodopa NA Top 5 diseases 31510658 Bioinformatics 2019
25 76.8 720 Cdataset Drug, Disease NA BNNR (Bounded Nuclear Norm Regularization) Matrix Completion Drug Disease Association (DDA) https://github.com/BioinformaticsCSU/BNNR Case studies NA NA Levodopa NA Top 5 diseases 31510658 Bioinformatics 2019
26 76.6 1691 NA Drug, Target Drug: SMILES, Target: amino-acid sequences NA Convolutional Neural Network (CNN),Deep Neural Network (DNN),Random Forest (RF) Drug Target Interaction (DTI) https://github.com/Shkev/Sars-CoV-2-NSP-Predictions Case studies NA NA NA Drug target interaction 13 predictions 35468672 Front Biosci (Landmark Ed) 2022
27 76.54 1197 Fdataset Drug, Disease Drug: SMILES; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Dexamethasone NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 SND Drug, Disease NA SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Levofloxacin NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Sparfloxacin NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 Fdataset Drug, Disease Drug: SMILES; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Triamcinolone NA Top 6 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Dexamethasone NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 Fdataset Drug, Disease Drug: SMILES; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Levofloxacin NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 SND Drug, Disease NA SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Loteprednol NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Triamcinolone NA Top 6 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Levofloxacin NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 Fdataset Drug, Disease Drug: SMILES; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Loteprednol NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 SND Drug, Disease NA SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Sparfloxacin NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 SND Drug, Disease NA SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Dexamethasone NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 LRSSL Drug, Disease Drug: drug chemical structure, Pfam domain annotation of drug targets, gene ontology term of targets; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Loteprednol NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 Fdataset Drug, Disease Drug: SMILES; Disease: Phenotye SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Sparfloxacin NA Top 7 diseases 33482713 BMC Bioinformatics 2021
27 76.54 1197 SND Drug, Disease NA SNF-NN (Similarity network fusion and neural networks) Similarity Network Fusion (SNF),Neural Network Drug Disease Association (DDA) http://pages.cpsc.ucalgary.ca/ tnjarada/snf-nn.php Case studies NA NA Triamcinolone NA Top 6 diseases 33482713 BMC Bioinformatics 2021
28 76.5 1776 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences DeepFusion Graph Convolutional Network (GCN),Transformer Drug Target Interaction (DTI) NA Case studies NA NA NA Drug target interaction Top 14 predictions 35219861 Methods 2022
28 76.5 1776 BIOSNAP Drug, Target Drug: SMILES, Target: the amino acid sequences DeepFusion Graph Convolutional Network (GCN),Transformer Drug Target Interaction (DTI) NA Case studies NA NA NA Drug target interaction Top 14 predictions 35219861 Methods 2022
29 76 1578 NA Drug, Target Drug: chemical structures, Target: primary sequence GANDTI Generative Adversarial Network (GAN),Graph convolutional autoencoder Drug Target Interaction (DTI) NA Case studies NA NA Olanzapine NA Top 10 targets 32750854 IEEE/ACM Trans Comput Biol Bioinform 2022
29 76 1578 NA Drug, Target Drug: chemical structures, Target: primary sequence GANDTI Generative Adversarial Network (GAN),Graph convolutional autoencoder Drug Target Interaction (DTI) NA Case studies NA NA Aripiprnazole NA Top 10 targets 32750854 IEEE/ACM Trans Comput Biol Bioinform 2022
29 76 2093 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences DGDTA Graph Attention Network (GAT),Graph Convolutional Network (GCN),Bidirectional Long Short-Term Memory (Bi-LSTM),Multilayer Convolutional Network Drug Target binding Affinity (DTA) https://github.com/luojunwei/DGDTA Case studies NA Receptor Tyrosine Kinases (RTKs) NA NA Top 1 drug 37777712 BMC Bioinformatics 2023
29 76 1578 NA Drug, Target Drug: chemical structures, Target: primary sequence GANDTI Generative Adversarial Network (GAN),Graph convolutional autoencoder Drug Target Interaction (DTI) NA Case studies NA NA Ziprasidone NA Top 10 targets 32750854 IEEE/ACM Trans Comput Biol Bioinform 2022
29 76 1578 NA Drug, Target Drug: chemical structures, Target: primary sequence GANDTI Generative Adversarial Network (GAN),Graph convolutional autoencoder Drug Target Interaction (DTI) NA Case studies NA NA Quetiapine NA Top 10 targets 32750854 IEEE/ACM Trans Comput Biol Bioinform 2022
29 76 1578 NA Drug, Target Drug: chemical structures, Target: primary sequence GANDTI Generative Adversarial Network (GAN),Graph convolutional autoencoder Drug Target Interaction (DTI) NA Case studies NA NA Clozapine NA Top 10 targets 32750854 IEEE/ACM Trans Comput Biol Bioinform 2022
29 76 2093 KIBA Drug, Target Drug: SMILES, Target: the amino acid sequences DGDTA Graph Attention Network (GAT),Graph Convolutional Network (GCN),Bidirectional Long Short-Term Memory (Bi-LSTM),Multilayer Convolutional Network Drug Target binding Affinity (DTA) https://github.com/luojunwei/DGDTA Case studies NA Receptor Tyrosine Kinases (RTKs) NA NA Top 1 drug 37777712 BMC Bioinformatics 2023
30 75 2066 DNdataset Drug, Disease Drug: SMILES, Disease: the medical description information SSLDR Matrix Factorization Drug Disease Association (DDA) NA Case studies NA NA Doxorubicin, Gemcitabine, Vincristine NA Top 5 diseases 37028367 IEEE/ACM Trans Comput Biol Bioinform 2023
30 75 2066 Fdataset Drug, Disease Drug: SMILES, Disease: the medical description information SSLDR Matrix Factorization Drug Disease Association (DDA) NA Case studies NA NA Doxorubicin, Gemcitabine, Vincristine NA Top 5 diseases 37028367 IEEE/ACM Trans Comput Biol Bioinform 2023
30 75 2066 Cdataset Drug, Disease Drug: SMILES, Disease: the medical description information SSLDR Matrix Factorization Drug Disease Association (DDA) NA Case studies NA NA Doxorubicin, Gemcitabine, Vincristine NA Top 5 diseases 37028367 IEEE/ACM Trans Comput Biol Bioinform 2023
31 73.7 1032 Fdataset Drug, Disease Drug: SMILES, Disease: Phenotye NEDD Random Forest (RF),Random Walk (RW) Drug Disease Association (DDA) NA Case studies NA NA NA Drug disease interaction Top 15 predictions 32938396 BMC Bioinformatics 2020
32 73.5 1683 RPD-Net Drug, Disease, Target Drug: chemical substructures, Target: the primary sequences DNDTI Non-negative Matrix Factorization (NMF) Drug Target Interaction (DTI) NA Case studies NA NA Clozapine NA Top 10 targets 34673498 IEEE J Biomed Health Inform 2022
32 73.5 717 LRSSL Drug, Disease Drug: chemical substructure, chemical fingerprints, Disease: MeSH CBPred Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Disease Association (DDA) NA Case studies NA NA Ofloxacin NA Top 10 diseases 31336774 Cells 2019
32 73.5 1683 RPD-Net Drug, Disease, Target Drug: chemical substructures, Target: the primary sequences DNDTI Non-negative Matrix Factorization (NMF) Drug Target Interaction (DTI) NA Case studies NA NA Olanzapine NA Top 10 targets 34673498 IEEE J Biomed Health Inform 2022
32 73.5 717 LRSSL Drug, Disease Drug: chemical substructure, chemical fingerprints, Disease: MeSH CBPred Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Disease Association (DDA) NA Case studies NA NA Ampicillin NA Top 10 diseases 31336774 Cells 2019
32 73.5 717 LRSSL Drug, Disease Drug: chemical substructure, chemical fingerprints, Disease: MeSH CBPred Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Disease Association (DDA) NA Case studies NA NA Ciprofloxacin NA Top 10 diseases 31336774 Cells 2019
32 73.5 1683 RPD-Net Drug, Disease, Target Drug: chemical substructures, Target: the primary sequences DNDTI Non-negative Matrix Factorization (NMF) Drug Target Interaction (DTI) NA Case studies NA NA Aripiprazole NA Top 10 targets 34673498 IEEE J Biomed Health Inform 2022
32 73.5 717 LRSSL Drug, Disease Drug: chemical substructure, chemical fingerprints, Disease: MeSH CBPred Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Disease Association (DDA) NA Case studies NA NA Levofloxacin NA Top 10 diseases 31336774 Cells 2019
32 73.5 1683 RPD-Net Drug, Disease, Target Drug: chemical substructures, Target: the primary sequences DNDTI Non-negative Matrix Factorization (NMF) Drug Target Interaction (DTI) NA Case studies NA NA Amitriptyline NA Top 10 targets 34673498 IEEE J Biomed Health Inform 2022
32 73.5 717 LRSSL Drug, Disease Drug: chemical substructure, chemical fingerprints, Disease: MeSH CBPred Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Disease Association (DDA) NA Case studies NA NA Ceftriaxone NA Top 10 diseases 31336774 Cells 2019
32 73.5 1683 RPD-Net Drug, Disease, Target Drug: chemical substructures, Target: the primary sequences DNDTI Non-negative Matrix Factorization (NMF) Drug Target Interaction (DTI) NA Case studies NA NA Asenapine NA Top 10 targets 34673498 IEEE J Biomed Health Inform 2022
33 73.2 1981 KIBA Drug, Target Drug: SMILES, Target: the amino acid sequences GIFDTI Convolutional Neural Network (CNN),Transformer Drug Target Interaction (DTI) https://github.com/zhaoqichang/GIFDTI Case studies NA NA Fludiazepam NA Top 20 targets 36445997 IEEE/ACM Trans Comput Biol Bioinform 2023
33 73.2 1981 DrugBank Drug, Target Drug: SMILES, Target: the amino acid sequences GIFDTI Convolutional Neural Network (CNN),Transformer Drug Target Interaction (DTI) https://github.com/zhaoqichang/GIFDTI Case studies NA NA Fludiazepam NA Top 20 targets 36445997 IEEE/ACM Trans Comput Biol Bioinform 2023
33 73.2 1981 DrugBank Drug, Target Drug: SMILES, Target: the amino acid sequences GIFDTI Convolutional Neural Network (CNN),Transformer Drug Target Interaction (DTI) https://github.com/zhaoqichang/GIFDTI Case studies NA Epidermal Growth Factor Receptor (EGFR) NA NA Top 20 drugs 36445997 IEEE/ACM Trans Comput Biol Bioinform 2023
33 73.2 1981 KIBA Drug, Target Drug: SMILES, Target: the amino acid sequences GIFDTI Convolutional Neural Network (CNN),Transformer Drug Target Interaction (DTI) https://github.com/zhaoqichang/GIFDTI Case studies NA Epidermal Growth Factor Receptor (EGFR) NA NA Top 20 drugs 36445997 IEEE/ACM Trans Comput Biol Bioinform 2023
33 73.2 1981 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences GIFDTI Convolutional Neural Network (CNN),Transformer Drug Target Interaction (DTI) https://github.com/zhaoqichang/GIFDTI Case studies NA NA Fludiazepam NA Top 20 targets 36445997 IEEE/ACM Trans Comput Biol Bioinform 2023
33 73.2 1981 BindingDB Drug, Target Drug: SMILES, Target: the amino acid sequences GIFDTI Convolutional Neural Network (CNN),Transformer Drug Target Interaction (DTI) https://github.com/zhaoqichang/GIFDTI Case studies NA NA Fludiazepam NA Top 20 targets 36445997 IEEE/ACM Trans Comput Biol Bioinform 2023
33 73.2 1981 BindingDB Drug, Target Drug: SMILES, Target: the amino acid sequences GIFDTI Convolutional Neural Network (CNN),Transformer Drug Target Interaction (DTI) https://github.com/zhaoqichang/GIFDTI Case studies NA Epidermal Growth Factor Receptor (EGFR) NA NA Top 20 drugs 36445997 IEEE/ACM Trans Comput Biol Bioinform 2023
33 73.2 1981 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences GIFDTI Convolutional Neural Network (CNN),Transformer Drug Target Interaction (DTI) https://github.com/zhaoqichang/GIFDTI Case studies NA Epidermal Growth Factor Receptor (EGFR) NA NA Top 20 drugs 36445997 IEEE/ACM Trans Comput Biol Bioinform 2023
34 72.5 741 NA Drug, Target Drug: structure, Target: sequence NA Low Rank Embedding (LRE) Drug Target Interaction (DTI) NA Case studies NA NA NA Drug target interaction Top 30 predictions 28541222 IEEE/ACM Trans Comput Biol Bioinform 2019
34 72.5 764 NA Drug, Target Drug: structure, Target: sequence MCM Matrix Completion Drug Target Interaction (DTI) NA Case studies NA NA NA Drug target interaction Top 26 predictions 31538961 IET Syst Biol 2019
35 72.1 1244 NA Drug, Disease Drug: chemical structural, CMLDR Collaborative metric learning algorithm Drug Disease Association (DDA) NA Case studies NA NA Risperidone NA Top 20 diseases 31283509 IEEE/ACM Trans Comput Biol Bioinform 2021
35 72.1 1244 NA Drug, Disease Drug: chemical structural, CMLDR Collaborative metric learning algorithm Drug Disease Association (DDA) NA Case studies NA NA Cyclophosphamide NA Top 20 diseases 31283509 IEEE/ACM Trans Comput Biol Bioinform 2021
36 71.64285714 343 External _Kinases Drug, Target Drug: SMILES, Target: The primary sequence SDTNBI (Substructure–drug–target network-based inference) NetInfer package Drug Target Interaction (DTI) NA Case studies NA NA NSAIDs NA 3 targets 26944082 Brief Bioinform 2017
36 71.64285714 343 IC Drug, Target Drug: SMILES, Target: The primary sequence SDTNBI (Substructure–drug–target network-based inference) NetInfer package Drug Target Interaction (DTI) NA Case studies NA NA NSAIDs NA 3 targets 26944082 Brief Bioinform 2017
36 71.64285714 343 NR Drug, Target Drug: SMILES, Target: The primary sequence SDTNBI (Substructure–drug–target network-based inference) NetInfer package Drug Target Interaction (DTI) NA Case studies NA NA NSAIDs NA 3 targets 26944082 Brief Bioinform 2017
36 71.64285714 343 GPCR Drug, Target Drug: SMILES, Target: The primary sequence SDTNBI (Substructure–drug–target network-based inference) NetInfer package Drug Target Interaction (DTI) NA Case studies NA NA NSAIDs NA 3 targets 26944082 Brief Bioinform 2017
36 71.64285714 343 Global Drug, Target Drug: SMILES, Target: The primary sequence SDTNBI (Substructure–drug–target network-based inference) NetInfer package Drug Target Interaction (DTI) NA Case studies NA NA NSAIDs NA 3 targets 26944082 Brief Bioinform 2017
36 71.64285714 343 External_GPCR Drug, Target Drug: SMILES, Target: The primary sequence SDTNBI (Substructure–drug–target network-based inference) NetInfer package Drug Target Interaction (DTI) NA Case studies NA NA NSAIDs NA 3 targets 26944082 Brief Bioinform 2017
36 71.64285714 343 Kinases Drug, Target Drug: SMILES, Target: The primary sequence SDTNBI (Substructure–drug–target network-based inference) NetInfer package Drug Target Interaction (DTI) NA Case studies NA NA NSAIDs NA 3 targets 26944082 Brief Bioinform 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Tacrolimus NA Top 5 diseases 28096083 Bioinformatics 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Tolmetin NA Top 5 diseases 28096083 Bioinformatics 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Fenoprofen NA Top 5 diseases 28096083 Bioinformatics 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Nimodipine NA Top 5 diseases 28096083 Bioinformatics 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Ziprasidone NA Top 5 diseases 28096083 Bioinformatics 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Citalopram NA Top 5 diseases 28096083 Bioinformatics 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Progesterone NA Top 5 diseases 28096083 Bioinformatics 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Dextromethorphan NA Top 5 diseases 28096083 Bioinformatics 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Thiopental NA Top 5 diseases 28096083 Bioinformatics 2017
37 71.04 361 LRSSL Drug, Disease Drug: chemical fingerprints, target target domain, target gene ontology annotation; Disease: MeSH LRSSL (Laplacian regularized sparse subspace learning) Laplacian regularized sparse subspace learning Drug Disease Association (DDA) https://github.com/LiangXujun/LRSSL Case studies NA NA Yohimbine NA Top 5 diseases 28096083 Bioinformatics 2017
38 70.9 1796 Zhang's dataset Drug, Disease Drug: SMILES, Disease: Mesh semantic GraphPK (Graph-based Prior Knowledge) Multimodal neural network Drug Disease Association (DDA) NA Case studies NA NA NA Drug disease interaction Top 10 predictions 34375284 IEEE/ACM Trans Comput Biol Bioinform 2022
38 70.9 1796 Zhang's dataset Drug, Disease Drug: SMILES, Disease: Mesh semantic GraphPK (Graph-based Prior Knowledge) Multimodal neural network Drug Disease Association (DDA) NA Case studies NA NA NA Drug disease interaction Top 10 predictions 34375284 IEEE/ACM Trans Comput Biol Bioinform 2022
38 70.9 1796 Amazon's dataset Drug, Disease Drug: SMILES, Disease: Mesh semantic GraphPK (Graph-based Prior Knowledge) Multimodal neural network Drug Disease Association (DDA) NA Case studies NA NA NA Drug disease interaction Top 10 predictions 34375284 IEEE/ACM Trans Comput Biol Bioinform 2022
39 70.4 150 Yamanishi_IC Drug, Target Drug: chemical sturcture, Target: target sequence NA Adaptive combination Drug Target Interaction (DTI) NA Case studies NA NA NA Drug target interaction Top 5 predictions 26543857 Biomed Res Int 2015
39 70.4 150 Yamanishi_GPCR Drug, Target Drug: chemical sturcture, Target: target sequence NA Adaptive combination Drug Target Interaction (DTI) NA Case studies NA NA NA Drug target interaction Top 5 predictions 26543857 Biomed Res Int 2015
39 70.4 150 Yamanishi_NR Drug, Target Drug: chemical sturcture, Target: target sequence NA Adaptive combination Drug Target Interaction (DTI) NA Case studies NA NA NA Drug target interaction Top 5 predictions 26543857 Biomed Res Int 2015
39 70.4 150 Yamanishi_E Drug, Target Drug: chemical sturcture, Target: target sequence NA Adaptive combination Drug Target Interaction (DTI) NA Case studies NA NA NA Drug target interaction Top 5 predictions 26543857 Biomed Res Int 2015
40 70.1 789 NA Drug, Disease Drug: SMILES, Diseases: MeSH terms NA Non-linear computational approach Drug Disease Association (DDA) http://bioinformatics.aut.ac.ir/drug-disc/ (Data) Case studies NA NA NA Drug disease interaction Top 16 predictions 31726977 BMC Bioinformatics 2019
41 68.9 813 Cancer subset Drug, Disease, Target Drug: chemical structure, Target: the amino acid sequences NA Tensor decomposition Drug Disease Target associations NA Case studies NA NA NA Drug target interaction Top 10 predictions 31839008 BMC Bioinformatics 2019
41 68.9 813 DTD Drug, Disease, Target Drug: chemical structure, Target: the amino acid sequences NA Tensor decomposition Drug Disease Target associations NA Case studies NA NA NA Drug target interaction Top 10 predictions 31839008 BMC Bioinformatics 2019
42 68.7 2091 DGIdb Drug, Gene NA DGCL (Dynamic hyperGraph Contrastive Learning) Graph Neural Network (GNN),Multi Layer Perception (MLP) Drug Gene Interaction (DGI) https://github.com/wentao228/DGCL Case studies NA HMOX1 NA NA Top 10 drugs 37864294 Brief Bioinform 2023
42 68.7 2091 LINCS L1000 Drug, Gene NA DGCL (Dynamic hyperGraph Contrastive Learning) Graph Neural Network (GNN),Multi Layer Perception (MLP) Drug Gene Interaction (DGI) https://github.com/wentao228/DGCL Case studies NA HMOX1 NA NA Top 10 drugs 37864294 Brief Bioinform 2023
42 68.7 2091 DrugBank Drug, Gene NA DGCL (Dynamic hyperGraph Contrastive Learning) Graph Neural Network (GNN),Multi Layer Perception (MLP) Drug Gene Interaction (DGI) https://github.com/wentao228/DGCL Case studies NA HMOX1 NA NA Top 10 drugs 37864294 Brief Bioinform 2023
43 68.1 467 NA Drug, Target, Side-effect Drug: chemical properties, target targets, side-effect NA Pareto dominance,Collaborative filtering Drug Disease Association (DDA) NA NA NA NA NA Drug disease interaction Top 20 predictions 29649971 BMC Bioinformatics 2018
44 67.3 1836 NA Drug, Target Drug: Fingerprint, KUALA (Kinase drUgs mAchine Learning frAmework) Naïve Bayes (NB),Logistic regression (LR),Support Vector Machine (SVM),Decision Tree (DT),Random Forest (RF),Neural Network (NNet),eXtreme Gradient Boosting (XGBoost),K-Nearest Neighbour (K-NN),Classification and Regression Tree (CART),Least Absolute Shrinkage and Selection Operator (LASSO),Ridge Regression (RIDGE),Elastic net regression (ELNET) Drug Target Interaction (DTI) https://github.com/molinfrimed/multi-kinases Case studies NA Kinases NA Drug target interaction 5 pedictions 36284125 Sci Rep 2022
45 67 1937 DNdataset Drug, Disease Drug: SMILES, Disease: the medical description PUON Matrix Factorization Drug Disease Association (DDA) NA Case studies NA Doxorubicin, Gemcitabine, Vincristine, Methotrexate, Risperidone NA NA Top 5 diseases 36197871 IEEE/ACM Trans Comput Biol Bioinform 2023
45 67 1021 NA Drug, Disease, miRNA Drug: chemical structure, side-effect, functional consistency; miRNA: target genes, disease targets; Disease: MeSH BIMC Bilateral-inductive matrix completion (BIMC) Drug Disease Association (DDA) https://github.com/Deepthi-K523/BIMC Case studies NA NA Aminolevulinic acid NA Top 10 diseases 32583015 Mol Genet Genomics 2020
45 67 1937 Ldataset Drug, Disease Drug: SMILES, Disease: the medical description PUON Matrix Factorization Drug Disease Association (DDA) NA Case studies NA Doxorubicin, Gemcitabine, Vincristine, Methotrexate, Risperidone NA NA Top 5 diseases 36197871 IEEE/ACM Trans Comput Biol Bioinform 2023
45 67 1937 Gottlieb dataset (Fdataset) Drug, Disease Drug: SMILES, Disease: the medical description PUON Matrix Factorization Drug Disease Association (DDA) NA Case studies NA Doxorubicin, Gemcitabine, Vincristine, Methotrexate, Risperidone NA NA Top 5 diseases 36197871 IEEE/ACM Trans Comput Biol Bioinform 2023
45 67 1021 NA Drug, Disease, miRNA Drug: chemical structure, side-effect, functional consistency; miRNA: target genes, disease targets; Disease: MeSH BIMC Bilateral-inductive matrix completion (BIMC) Drug Disease Association (DDA) https://github.com/Deepthi-K523/BIMC Case studies NA NA Almitrine NA Top 10 diseases 32583015 Mol Genet Genomics 2020
45 67 1937 Cdataset Drug, Disease Drug: SMILES, Disease: the medical description PUON Matrix Factorization Drug Disease Association (DDA) NA Case studies NA Doxorubicin, Gemcitabine, Vincristine, Methotrexate, Risperidone NA NA Top 5 diseases 36197871 IEEE/ACM Trans Comput Biol Bioinform 2023
46 66.8 2181 BindingDB Drug, Target Drug: SMILES NA Extra tree classifier (ETC) Drug Target Interaction (DTI) NA Special studies NA Epidermal Growth Factor Receptor (EGFR) NA NA Top 9 drugs 38000720 Eur J Pharmacol 2024
47 66.4 1990 PREDICT (Fdataset) Drug, Disease NA NetPro Label Propagation Drug Disease Association (DDA) https://github.com/hyr0771/NetPro Case studies NA NA Levodopa, Flecainide, Doxorubicin NA Top 5 diseases 37018341 IEEE/ACM Trans Comput Biol Bioinform 2023
47 66.4 1990 Cdataset Drug, Disease NA NetPro Label Propagation Drug Disease Association (DDA) https://github.com/hyr0771/NetPro Case studies NA NA Levodopa, Flecainide, Doxorubicin NA Top 5 diseases 37018341 IEEE/ACM Trans Comput Biol Bioinform 2023
47 66.4 1990 LRSSL Drug, Disease NA NetPro Label Propagation Drug Disease Association (DDA) https://github.com/hyr0771/NetPro Case studies NA NA Levodopa, Flecainide, Doxorubicin NA Top 5 diseases 37018341 IEEE/ACM Trans Comput Biol Bioinform 2023
48 66.2 386 Yamanishi_GPCR Drug, Target Drug: molecule, Target: target sequence PUDTI Support Vector Machine (SVM) Drug Target Interaction (DTI) NA Case studies NA DNA topoisomerase 2-alpha (P11388) NA NA 31 drugs 28808275 Sci Rep 2017
48 66.2 386 Yamanishi_E Drug, Target Drug: molecule, Target: target sequence PUDTI Support Vector Machine (SVM) Drug Target Interaction (DTI) NA Case studies NA DNA topoisomerase 2-alpha (P11388) NA NA 31 drugs 28808275 Sci Rep 2017
48 66.2 386 Yamanishi_NR Drug, Target Drug: molecule, Target: target sequence PUDTI Support Vector Machine (SVM) Drug Target Interaction (DTI) NA Case studies NA NA Astemizole NA 14 targets 28808275 Sci Rep 2017
48 66.2 386 Yamanishi_IC Drug, Target Drug: molecule, Target: target sequence PUDTI Support Vector Machine (SVM) Drug Target Interaction (DTI) NA Case studies NA NA Astemizole NA 14 targets 28808275 Sci Rep 2017
48 66.2 386 Yamanishi_NR Drug, Target Drug: molecule, Target: target sequence PUDTI Support Vector Machine (SVM) Drug Target Interaction (DTI) NA Case studies NA DNA topoisomerase 2-alpha (P11388) NA NA 31 drugs 28808275 Sci Rep 2017
48 66.2 386 Yamanishi_IC Drug, Target Drug: molecule, Target: target sequence PUDTI Support Vector Machine (SVM) Drug Target Interaction (DTI) NA Case studies NA DNA topoisomerase 2-alpha (P11388) NA NA 31 drugs 28808275 Sci Rep 2017
48 66.2 386 Yamanishi_GPCR Drug, Target Drug: molecule, Target: target sequence PUDTI Support Vector Machine (SVM) Drug Target Interaction (DTI) NA Case studies NA NA Astemizole NA 14 targets 28808275 Sci Rep 2017
48 66.2 386 Yamanishi_E Drug, Target Drug: molecule, Target: target sequence PUDTI Support Vector Machine (SVM) Drug Target Interaction (DTI) NA Case studies NA NA Astemizole NA 14 targets 28808275 Sci Rep 2017
49 65.6 573 Fdataset Drug, Disease Drug: chemical substructures, Disease: MeSH RLSDR (Regularized Least Square for Drug Repositioning) Regularized Least Square Drug Disease Association (DDA) NA Case studies NA NA NA Drug disease interaction Top 19 predictions 29700660 Acta Biotheor 2018
49 65.6 573 Fdataset Drug, Disease Drug: chemical substructures, Disease: MeSH RLSDR (Regularized Least Square for Drug Repositioning) Regularized Least Square Drug Disease Association (DDA) NA Case studies NA NA NA Drug disease interaction Top 19 predictions 29700660 Acta Biotheor 2018
49 65.6 573 DNdataset Drug, Disease NA RLSDR (Regularized Least Square for Drug Repositioning) Regularized Least Square Drug Disease Association (DDA) NA Case studies NA NA NA Drug disease interaction Top 19 predictions 29700660 Acta Biotheor 2018
50 65.5 2087 NA Drug, Disease, Target, Side-effect Drug: SMILES, Target: the amino acid sequences BG-DTI Convolutional Neural Network (CNN),Graph Neural Network (GNN),Graph Attention Network (GAT),Support Vector Machine (SVM) Drug Target Interaction (DTI) https://github.com/wyx2012/BG-DTI NA NA NA NA NA NA 37764321 Molecules 2023
51 65 1396 DTINet Drug, Disease, Target NA DDTE Graph Embedding Algorithm Drug Target Interaction (DTI) NA Case studies NA NA NA Drug disease interaction 3 predictions 34119691 J Biomed Inform 2021
52 64.5 968 Fdataset (Dataset 2) Drug, Disease, Target Drug: SMILES, Target: target sequence Disease: MeSH iDrug Matrix Completion Drug Target Interaction (DTI) https://github.com/Case-esaC/iDrug NA NA NA NA NA NA 32667925 PLoS Comput Biol 2020
52 64.5 968 Dataset 1 Drug, Disease, Target Drug: SMILES, Target: target sequence Disease: MeSH iDrug Matrix Completion Drug Target Interaction (DTI) https://github.com/Case-esaC/iDrug NA NA NA NA NA NA 32667925 PLoS Comput Biol 2020
53 63.7 1856 NA Drug, Disease, Target, Side-effect NA DTI-GTN Graph Transformer Network Drug Target Interaction (DTI) https://github.com/q498756498/DTI-GTN Case studies NA CHRM3 NA NA Top 2 drugs 36329406 BMC Bioinformatics 2022
53 63.7 1856 NA Drug, Disease, Target, Side-effect NA DTI-GTN Graph Transformer Network Drug Target Interaction (DTI) https://github.com/q498756498/DTI-GTN Case studies NA HTR1A NA NA Top 4 drugs 36329406 BMC Bioinformatics 2022
54 62.5 736 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms ANMF Additional Neural Matrix Factorization Drug Disease Association (DDA) https://github.com/MortySn/ANMF NA NA NA NA NA NA 31412762 BMC Bioinformatics 2019
54 62.5 736 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms ANMF Additional Neural Matrix Factorization Drug Disease Association (DDA) https://github.com/MortySn/ANMF NA NA NA NA NA NA 31412762 BMC Bioinformatics 2019
54 62.5 1072 NA Drug, Disease, Target, Pathway, Therapeutic classes NA NMTF (Non-negative Matrix Tri-Factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/DEIB-GECO/NMTF-DrugRepositioning Case studies NA NA NA Drug disease interaction Top 5 predictions 32365039 IEEE J Biomed Health Inform 2020
55 60.9 1340 IC Drug, Target Drug: SMILES, Target: Sequence DTI-MLCD Random Forest (RF) Drug Target Interaction (DTI) https://github.com/a96123155/DTI-MLCD NA NA NA NA NA NA 32964234 Brief Bioinform 2021
55 60.9 1340 GPCR Drug, Target Drug: SMILES, Target: Sequence DTI-MLCD Random Forest (RF) Drug Target Interaction (DTI) https://github.com/a96123155/DTI-MLCD NA NA NA NA NA NA 32964234 Brief Bioinform 2021
55 60.9 1340 NR Drug, Target Drug: SMILES, Target: Sequence DTI-MLCD Random Forest (RF) Drug Target Interaction (DTI) https://github.com/a96123155/DTI-MLCD NA NA NA NA NA NA 32964234 Brief Bioinform 2021
55 60.9 1340 E Drug, Target Drug: SMILES, Target: Sequence DTI-MLCD Random Forest (RF) Drug Target Interaction (DTI) https://github.com/a96123155/DTI-MLCD NA NA NA NA NA NA 32964234 Brief Bioinform 2021
56 60.5 1980 Ovarian Cancer Dataset Drug, Gene NA SPLNMTF (Self-Paced Non-negative Matrix Tri-Factorization) Matrix Factorization Drug Disease Association (DDA) https://github.com/qi0906/SPLNMTF NA NA NA NA NA NA 36445996 IEEE/ACM Trans Comput Biol Bioinform 2023
56 60.5 1980 Acute myeloid leukemia (AML) dataset Drug, Gene NA SPLNMTF (Self-Paced Non-negative Matrix Tri-Factorization) Matrix Factorization Drug Disease Association (DDA) https://github.com/qi0906/SPLNMTF NA NA NA NA NA NA 36445996 IEEE/ACM Trans Comput Biol Bioinform 2023
57 60.1 1867 Yamanishi NA NA MHADTI (Multiview heterogeneous information network embedding with Hierarchical Attention mechanisms to discover potential Drug–Target Interaction) Multi Layer Perception (MLP) Drug Target Interaction (DTI) https://github.com/pxystudy/MHADTI Case studies NA NA Pregabalin,Oxycodone,Sunitinib,Acetaminophen,Gefitinib NA NA 36242566 Brief Bioinform 2022
57 60.1 1867 NEDTP NA NA MHADTI (Multiview heterogeneous information network embedding with Hierarchical Attention mechanisms to discover potential Drug–Target Interaction) Multi Layer Perception (MLP) Drug Target Interaction (DTI) https://github.com/pxystudy/MHADTI Case studies NA NA Pregabalin,Oxycodone,Sunitinib,Acetaminophen,Gefitinib NA NA 36242566 Brief Bioinform 2022
57 60.1 1867 NA Drug, Target Drug: SMILES, Disease: MeSH, Target: sequence MHADTI (Multiview heterogeneous information network embedding with Hierarchical Attention mechanisms to discover potential Drug–Target Interaction) Multi Layer Perception (MLP) Drug Target Interaction (DTI) https://github.com/pxystudy/MHADTI Case studies NA NA Pregabalin,Oxycodone,Sunitinib,Acetaminophen,Gefitinib NA NA 36242566 Brief Bioinform 2022
57 60.1 1867 DTINet NA NA MHADTI (Multiview heterogeneous information network embedding with Hierarchical Attention mechanisms to discover potential Drug–Target Interaction) Multi Layer Perception (MLP) Drug Target Interaction (DTI) https://github.com/pxystudy/MHADTI Case studies NA NA Pregabalin,Oxycodone,Sunitinib,Acetaminophen,Gefitinib NA NA 36242566 Brief Bioinform 2022
57 60.1 1867 AGHEL NA NA MHADTI (Multiview heterogeneous information network embedding with Hierarchical Attention mechanisms to discover potential Drug–Target Interaction) Multi Layer Perception (MLP) Drug Target Interaction (DTI) https://github.com/pxystudy/MHADTI Case studies NA NA Pregabalin,Oxycodone,Sunitinib,Acetaminophen,Gefitinib NA NA 36242566 Brief Bioinform 2022
58 60.0875 2176 Yamanishi_E Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
58 60.0875 2176 DrugBank (version 5.1.9) Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
58 60.0875 2176 Yamanishi_GPCR Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
58 60.0875 2176 BIOSNAP Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
58 60.0875 2176 Yamanishi_IC Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
58 60.0875 2176 BindingDB Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
58 60.0875 2176 Davis Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
58 60.0875 2176 Yamanishi_NR Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
59 59.6 415 Yamanishi_E Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
59 59.6 415 Yamanishi_NR Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
59 59.6 415 Yamanishi_IC Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
59 59.6 415 Kinase (K) dataset Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
59 59.6 415 Yamanishi_GPCR Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
60 59.2 140 Fdataset Drug, Disease NA NA ProbS and HeatS Drug Disease Association (DDA) NA Case studies NA NA Aspirin NA Top 10 diseases 25969690 Comput Math Methods Med 2015
60 59.2 140 Fdataset Drug, Disease NA NA ProbS and HeatS Drug Disease Association (DDA) NA Case studies NA NA Tamoxifen NA Top 10 diseases 25969690 Comput Math Methods Med 2015
60 59.2 140 Fdataset Drug, Disease NA NA ProbS and HeatS Drug Disease Association (DDA) NA Case studies NA NA Felodipine NA Top 10 diseases 25969690 Comput Math Methods Med 2015
61 58.5 1132 Fdataset Drug, Disease Drug: SMILES, Disease: medical description data HAMN (Hybrid Attentional Memory Network) Collaborative Filtering,Autoencoder Drug Disease Association (DDA) NA NA NA NA NA NA NA 33297947 BMC Bioinformatics 2020
61 58.5 1132 Cdataset Drug, Disease Drug: SMILES, Disease: medical description data HAMN (Hybrid Attentional Memory Network) Collaborative Filtering,Autoencoder Drug Disease Association (DDA) NA NA NA NA NA NA NA 33297947 BMC Bioinformatics 2020
62 57 1719 Own dataset Drug, Target Drug: side-effects, drug chemical structure, drug physicochemical properties and therapeutic properties, Target: co-pathway, PPI network, Gene Ontology and gene-encoded target sequence DTI-HETA Graph Neural Network (GNN),Graph Attention Network (GAT) Drug Target Interaction (DTI) https://github.com/ZhangyuXM/DTI-HETA NA NA NA NA NA NA 35380622 Brief Bioinform 2022
62 57 2144 KIBA Drug, Target Drug: SMILES, Target: The amino acid Sequence. TeM-DTBA (Time-efficient Multimodal Drug Target Binding Affinity) Multi Layer Perception (MLP) Drug Target binding Affinity (DTA) https://github.com/hkmztrk/DeepDTA/tree/master/data. NA NA NA NA NA NA 37777631 J Comput Aided Mol Des 2023
62 57 1719 Yamanishi_E Drug, Target Drug: side-effects, drug chemical structure, drug physicochemical properties and therapeutic properties, Target: co-pathway, PPI network, Gene Ontology and gene-encoded target sequence DTI-HETA Graph Neural Network (GNN),Graph Attention Network (GAT) Drug Target Interaction (DTI) https://github.com/ZhangyuXM/DTI-HETA NA NA NA NA NA NA 35380622 Brief Bioinform 2022
62 57 1719 Yamanishi_IC Drug, Target Drug: side-effects, drug chemical structure, drug physicochemical properties and therapeutic properties, Target: co-pathway, PPI network, Gene Ontology and gene-encoded target sequence DTI-HETA Graph Neural Network (GNN),Graph Attention Network (GAT) Drug Target Interaction (DTI) https://github.com/ZhangyuXM/DTI-HETA NA NA NA NA NA NA 35380622 Brief Bioinform 2022
62 57 2144 Davis Drug, Target Drug: SMILES, Target: The amino acid Sequence. TeM-DTBA (Time-efficient Multimodal Drug Target Binding Affinity) Multi Layer Perception (MLP) Drug Target binding Affinity (DTA) https://github.com/hkmztrk/DeepDTA/tree/master/data. NA NA NA NA NA NA 37777631 J Comput Aided Mol Des 2023
63 56.76 1695 Yamanishi_NR Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
63 56.76 1695 Yamanishi_E Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
63 56.76 1695 CheMBL Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
63 56.76 1695 Yamanishi_IC Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
63 56.76 1695 Yamanishi_GPCR Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
64 55.5 816 NA Drug, Target Drug: chemical structure, Target: GO terms OCSVM (One-class Support Vector Machine) Support Vector Machine (SVM) Drug Target Interaction (DTI) Additional file 4 NA NA NA NA NA NA 31881829 BMC Bioinformatics 2019
65 55 1674 KIBA Drug, Target Drug: SMILES, Target: the amino acid sequences Affinity2Vec XGBoost Drug Target binding Affinity (DTA) https://github.com/MahaThafar/Affinity2Vec NA NA NA NA NA NA 35306525 Sci Rep 2022
65 55 1674 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences Affinity2Vec XGBoost Drug Target binding Affinity (DTA) https://github.com/MahaThafar/Affinity2Vec NA NA NA NA NA NA 35306525 Sci Rep 2022
66 54.5 1567 NeoDTI Drug, Disease, Target, Side-effect Drug: SMILES, Target: target sequence MultiDTI (Multi-modal DTI) Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/Deshan-Zhou/MultiDTI/ NA NA NA NA NA NA 34180970 Bioinformatics 2021
67 53.5 586 NA Drug, Disease Drug: PubChem fingerprints, Disease: MeSH DrPOCS (projection onto convex sets) Matrix Completion Drug Disease Association (DDA) NA NA NA NA NA NA NA 29993698 IEEE/ACM Trans Comput Biol Bioinform 2019
67 53.5 475 Dataset 1 Drug, Disease Drug: drug substructures, target target functional domain and GO annotations, Diseases: MeSH terms DR2DI Regularized Kernel Classifier Drug Disease Association (DDA) https://github.com/huayu1111/DR2DI NA NA NA NA NA NA 29687309 J Comput Aided Mol Des 2018
68 53 1748 C.elegans Drug, Target Drug: SMILES, Target: the amino acid sequences MHSADTI Graph Attention Network (GAT),Multi-head self-attention mechanism Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33956632 IEEE/ACM Trans Comput Biol Bioinform 2022
68 53 856 LRSSL Drug, Disease Drug: chemical structure, drug target domain, drug target gene ontology (GO); Disease: semantic DDAPRED Logistic Matrix Factorization Drug Disease Association (DDA) https://github.com/nongdaxiaofeng/DDAPRED NA NA NA NA NA NA 32062701 J Mol Model 2020
68 53 1748 DUD-E Drug, Target Drug: SMILES, Target: the amino acid sequences MHSADTI Graph Attention Network (GAT),Multi-head self-attention mechanism Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33956632 IEEE/ACM Trans Comput Biol Bioinform 2022
68 53 1748 DrugBank Drug, Target Drug: SMILES, Target: the amino acid sequences MHSADTI Graph Attention Network (GAT),Multi-head self-attention mechanism Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33956632 IEEE/ACM Trans Comput Biol Bioinform 2022
68 53 1748 Human Drug, Target Drug: SMILES, Target: the amino acid sequences MHSADTI Graph Attention Network (GAT),Multi-head self-attention mechanism Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33956632 IEEE/ACM Trans Comput Biol Bioinform 2022
69 52.98571429 973 dataset1_TR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 dataset1_NR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 Yamanishi_NR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 dataset2_David Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 dataset1_CR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 dataset1_E Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 Yamanishi_E Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 Yamanishi_IC Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 dataset2_Ketz Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 dataset1_CSM Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 dataset1_IC Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 dataset1_GPCR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 Yamanishi_GPCR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
69 52.98571429 973 dataset1_PK Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
70 52.75 1659 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences GEFA (Graph Early Fusion Affinity) Graph Convolutional Network (GCN) Drug Target binding Affinity (DTA) https://github.com/ngminhtri0394/GEFA NA NA NA NA NA NA 34197324 IEEE/ACM Trans Comput Biol Bioinform 2022
70 52.75 1659 PDBBind Drug, Target Drug: SMILES, Target: the amino acid sequences GEFA (Graph Early Fusion Affinity) Graph Convolutional Network (GCN) Drug Target binding Affinity (DTA) https://github.com/ngminhtri0394/GEFA NA NA NA NA NA NA 34197324 IEEE/ACM Trans Comput Biol Bioinform 2022
71 52.4 1717 D1 Drug, Target NA MccDTI Deep Autoencoder,Matrix Completion Drug Target Interaction (DTI) https://github.com/ShangCS/MccDTI NA NA NA NA NA NA 35262678 Brief Bioinform 2022
71 52.4 1717 D2 Drug, Target NA MccDTI Deep Autoencoder,Matrix Completion Drug Target Interaction (DTI) https://github.com/ShangCS/MccDTI NA NA NA NA NA NA 35262678 Brief Bioinform 2022
72 51.85 1518 DrugBank Drug, Target Drug: SMILES, Target: the amino acid sequences DTI-End-to-End-DL Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/larngroup/DTI-End-to-End-DL NA NA NA NA NA NA 32142454 IEEE/ACM Trans Comput Biol Bioinform 2021
72 51.85 1518 Yamanishi Drug, Target Drug: SMILES, Target: the amino acid sequences DTI-End-to-End-DL Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/larngroup/DTI-End-to-End-DL NA NA NA NA NA NA 32142454 IEEE/ACM Trans Comput Biol Bioinform 2021
72 51.85 1518 BioLip Drug, Target Drug: SMILES, Target: the amino acid sequences DTI-End-to-End-DL Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/larngroup/DTI-End-to-End-DL NA NA NA NA NA NA 32142454 IEEE/ACM Trans Comput Biol Bioinform 2021
72 51.85 1518 BindingDB Drug, Target Drug: SMILES, Target: the amino acid sequences DTI-End-to-End-DL Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/larngroup/DTI-End-to-End-DL NA NA NA NA NA NA 32142454 IEEE/ACM Trans Comput Biol Bioinform 2021
73 51.5 1838 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences DeepLPI Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Target Interaction (DTI) https://github.com/David-BominWei/DeepLPI NA NA NA NA NA NA 36307509 Sci Rep 2022
73 51.5 1838 COVID19-One Drug, Target Drug: SMILES, Target: the amino acid sequences DeepLPI Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Target Interaction (DTI) https://github.com/David-BominWei/DeepLPI NA NA NA NA NA NA 36307509 Sci Rep 2022
73 51.5 1838 BindingDB Drug, Target Drug: SMILES, Target: the amino acid sequences DeepLPI Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Target Interaction (DTI) https://github.com/David-BominWei/DeepLPI NA NA NA NA NA NA 36307509 Sci Rep 2022
74 51.4 1056 NA Drug, Target Drug: chemical structure PIMD Similarity Network Fusion (SNF) Drug Drug Interaction (DDI) https://github.com/Sepstar/PIMD/ Case studies NA NA NA NA NA 33075523 Genomics Proteomics Bioinformatics 2020
75 51 1678 Davis Drug, Target Drug: 2D chemical structure, Target: sequence NerLTR-DTA Learning To Rank (LTR) Drug Target binding Affinity (DTA) https://github.com/RUXIAOQING964914140/NerLTR-DTA NA NA NA NA NA NA 35134828 Bioinformatics 2022
75 51 1678 KIBA Drug, Target Drug: 2D chemical structure, Target: sequence NerLTR-DTA Learning To Rank (LTR) Drug Target binding Affinity (DTA) https://github.com/RUXIAOQING964914140/NerLTR-DTA NA NA NA NA NA NA 35134828 Bioinformatics 2022
76 50.75 2018 DTINet Drug, Target NA DEDTI-IEDTI Deep Neural Network (DNN) Drug Target Interaction (DTI) https://github.com/BioinformaticsIASBS/IEDTI-DEDTI Case studies NA NA NA NA Top 126 drugs 37286613 Sci Rep 2023
76 50.75 2018 Yamanishi Drug, Target NA DEDTI-IEDTI Deep Neural Network (DNN) Drug Target Interaction (DTI) https://github.com/BioinformaticsIASBS/IEDTI-DEDTI Case studies NA NA NA NA Top 126 drugs 37286613 Sci Rep 2023
77 50.5 2000 NA Drug, Disease, Target Drug: SMILES, Target: the amino acid sequences DT2Vec+ XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2VecPlus NA NA NA NA NA NA 37193964 BMC Bioinformatics 2023
77 50.5 794 NA Drug, Target Drug: SMILES, Proten: the amino acid sequence BANDIT Bayesian Drug Target Interaction (DTI) Select pieces of custom code can be made available upon request. NA NA NA NA NA NA 31745082 Nat Commun 2019
78 50.3 1787 Yamanishi_NR Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
78 50.3 1787 KEGG Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
78 50.3 1787 Yamanishi_E Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
78 50.3 1787 Yamanishi_IC Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
78 50.3 1787 DrugBank Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
78 50.3 1787 Yamanishi_GPCR Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
79 50.05 187 BindingDB Drug, Target Target: Fingerprint WES Bayesian network and multi-variate kernel approach Drug Target Interaction (DTI) NA NA NA NA NA NA NA 26155766 Sci Rep 2015
79 50.05 187 External data Drug, Target Target: Fingerprint WES Bayesian network and multi-variate kernel approach Drug Target Interaction (DTI) NA NA NA NA NA NA NA 26155766 Sci Rep 2015
80 50 1343 KIBA Drug, Target Drug: (the atom symbol, the number of adjacent atoms, the number of adjacent hydrogens, the implicit value of the atom, and whether the atom is in an aromatic structure), Target: (ASCII character string) GraphDTA Graph Neural Network (GNN) Drug Target binding Affinity (DTA) https://github.com/thinng/GraphDTA NA NA NA NA NA NA 33119053 Bioinformatics 2021
80 50 1343 Davis Drug, Target Drug: (the atom symbol, the number of adjacent atoms, the number of adjacent hydrogens, the implicit value of the atom, and whether the atom is in an aromatic structure), Target: (ASCII character string) GraphDTA Graph Neural Network (GNN) Drug Target binding Affinity (DTA) https://github.com/thinng/GraphDTA NA NA NA NA NA NA 33119053 Bioinformatics 2021
81 49.5 1203 NA Drug, Virus NA IRNMF (Indicator Regularized non-negative Matrix Factorization) Non-negative Matrix Factorization (NMF) Drug Virus Association (DVA) https://github.com/dukebai/IRNMF NA NA NA NA NA NA 33584672 Front Immunol 2021
82 49 1834 BindingDB Drug, Target Drug: SMILES, Target: the amino acid sequences ICAN (Interpretable Cross-Attention Network) Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/kuratahiroyuki/ICAN NA NA NA NA NA NA 36279284 PLoS One 2022
82 49 559 MULAN Drug, Disease, Gene Chemical: Extended Connectivity Fingerprint (ECFP), Gene: amino acid sequence ANTENNA Dual-regularized weighted,Imputed One Class Collaborative Filtering (OCCF) algorithm,Random Walk Restart Drug Disease Association (DDA) NA NA NA NA NA NA NA 29993812 IEEE/ACM Trans Comput Biol Bioinform 2018
82 49 1834 BIOSNAP Drug, Target Drug: SMILES, Target: the amino acid sequences ICAN (Interpretable Cross-Attention Network) Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/kuratahiroyuki/ICAN NA NA NA NA NA NA 36279284 PLoS One 2022
82 49 64 Fdataset Drug, Disease Drug: structure chemical, target, side-effect, Diseases: MeSH terms PreDR (Predict Drug Repositioning) Support Vector Machine (SVM) Drug Disease Association (DDA) NA NA NA NA NA NA NA 24244318 PLoS One 2013
82 49 1834 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences ICAN (Interpretable Cross-Attention Network) Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/kuratahiroyuki/ICAN NA NA NA NA NA NA 36279284 PLoS One 2022
83 48.8 1914 Hetero-B Drug, Disease, Target, Side-effect NA MHGNN (Metapath-aggregated Heterogeneous Graph Neural Network) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/Zora-LM/MHGNN-DTI NA NA NA NA NA NA 36592060 Brief Bioinform 2023
83 48.8 1914 Hetero-C Drug, Target, Gene, Side-effect NA MHGNN (Metapath-aggregated Heterogeneous Graph Neural Network) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/Zora-LM/MHGNN-DTI NA NA NA NA NA NA 36592060 Brief Bioinform 2023
83 48.8 1914 Hetero-A Drug, Disease, Target, Side-effect NA MHGNN (Metapath-aggregated Heterogeneous Graph Neural Network) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/Zora-LM/MHGNN-DTI NA NA NA NA NA NA 36592060 Brief Bioinform 2023
84 48.35 1235 dataset 1 Drug, Target Drug: constitutional, topological, and geometrical descriptors; Target: amino acid, pseudo-amino acid, and CTD (composition, transition, distribution) descriptors DTI-SNNFRA Shared nearest neighbors and fuzzy-rough approximation Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33606741 PLoS One 2021
84 48.35 1235 dataset 2 Drug, Target Drug: constitutional, topological, and geometrical descriptors; Target: amino acid, pseudo-amino acid, and CTD (composition, transition, distribution) descriptors DTI-SNNFRA Shared nearest neighbors and fuzzy-rough approximation Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33606741 PLoS One 2021
85 47.5 1795 NA Drug, Disease, Target, Side-effect, Substructure NA MGATRx Graph Neural Network (GNN) Drug Disease Association (DDA) https://github.com/yellajaswanth/MGATRx NA NA NA NA NA NA 34014830 IEEE/ACM Trans Comput Biol Bioinform 2022
86 47 723 Yamanishi_IC Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
86 47 723 Yamanishi_GPCR Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
86 47 723 Yamanishi_NR Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
86 47 723 Kuang's dataset Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
86 47 723 Yamanishi_E Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
87 46.75 2132 Fdataset Drug, Disease NA IDDI-DNN Convolutional Neural Network (CNN) Drug Disease Association (DDA) NA NA NA NA NA NA NA 37993777 BMC Bioinformatics 2023
87 46.75 2132 DNdataset Drug, Disease NA IDDI-DNN Convolutional Neural Network (CNN) Drug Disease Association (DDA) NA NA NA NA NA NA NA 37993777 BMC Bioinformatics 2023
88 46.7 1221 NDF-RT Drug, Disease NA IntegratedSim Similarity-fusion methods Drug Drug Interaction (DDI) NA NA NA NA NA NA NA 33557749 BMC Bioinformatics 2021
88 46.7 1221 PMID: 24551427 Drug, Target, Side-effect Drug(structure, target, side-effect) IntegratedSim Similarity-fusion methods Drug Drug Interaction (DDI) NA NA NA NA NA NA NA 33557749 BMC Bioinformatics 2021
89 46.56 1658 DTI-HN Drug, Disease, Target, Side-effect NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
89 46.56 1658 Yamanishi_NR Drug, Target NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
89 46.56 1658 Yamanishi_E Drug, Target NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
89 46.56 1658 Yamanishi_IC Drug, Target NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
89 46.56 1658 Yamanishi_GPCR Drug, Target NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
90 45 1220 NA Drug, Disease, Gene NA SAveRUNNER (Searching off-lAbel dRUg aNd NEtwoRk) Bi-Random walk-based algorithm Drug Disease Association (DDA) NA NA NA NA NA NA NA 33544720 PLoS Comput Biol 2021
91 44.5 1851 DRKG Drug, Disease, Gene, Anatomies NA GDRnet Graph Neural Network (GNN) Drug Disease Association (DDA) https://github.com/siddhant-doshi/GDRnet Case studies NA NA NA NA NA 36228466 Comput Biol Med 2022
92 44 1550 Luo's dataset Drug, Disease, Target, Side-effect NA KGE_NFM Neural Factorization Machine (NFM) Drug Target Interaction (DTI) https://zenodo.org/record/5500305 NA NA NA NA NA NA 34811351 Nat Commun 2021
92 44 1886 DNdataset Drug, Disease NA NMFDR (Neural Metric Factorization model for computational Drug Repositioning) Matrix Factorization Drug Disease Association (DDA) NA NA NA NA NA NA NA 35061591 IEEE/ACM Trans Comput Biol Bioinform 2023
92 44 1886 Fdataset Drug, Disease NA NMFDR (Neural Metric Factorization model for computational Drug Repositioning) Matrix Factorization Drug Disease Association (DDA) NA NA NA NA NA NA NA 35061591 IEEE/ACM Trans Comput Biol Bioinform 2023
92 44 1886 Cdataset Drug, Disease NA NMFDR (Neural Metric Factorization model for computational Drug Repositioning) Matrix Factorization Drug Disease Association (DDA) NA NA NA NA NA NA NA 35061591 IEEE/ACM Trans Comput Biol Bioinform 2023
93 42.4 465 NA Drug, Target, Gene, Side-effect Drug: Chemical structure, target, Gene, side-effect NA Growing Self Organizing Map (GSOM) Drug Drug Interaction (DDI) https://github.com/fathimanush786/two_tiered_clustrering_data NA NA NA NA NA NA 29642848 BMC Bioinformatics 2018
94 41.66 1473 Yamanishi_IC Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
94 41.66 1473 Yamanishi_GPCR Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
94 41.66 1473 Yamanishi_NR Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
94 41.66 1473 Olayan RS Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
94 41.66 1473 Yamanishi_E Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
95 40.7 1307 NA Drug, Target Drug: 2-D structural representations, CSConv2d Convolutional Block Attention Module (CBAM) Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33925310 Biomolecules 2021
96 40.5 142 NA Drug, Disease, Gene NA NA Matrix Factorization Drug Disease Association (DDA) NA NA NA NA NA NA NA 26078775 Comput Math Methods Med 2015
97 39.2 154 NA Drug Drug: chemical structure NA Markov Clustering Drug Drug Interaction (DDI) NA NA NA NA NA NA NA 24934184 Chem Biol Drug Des 2015
98 38 50 MATADOR Drug, Target NA RBM model Restricted Boltzmann Machine Drug Target Interaction (DTI) NA NA NA NA NA NA NA 23812976 Bioinformatics 2013
98 38 50 STITCH Drug, Target NA RBM model Restricted Boltzmann Machine Drug Target Interaction (DTI) NA NA NA NA NA NA NA 23812976 Bioinformatics 2013
99 37.8 328 MATADOR Drug, Target Drug: pubchem ID, Target: target ID(MeSH, STRING 7) NA Common Neighbours,Jaccard Index,Preferential Attachment,Katz Index Drug Target Interaction (DTI) http://www.cl.cam.ac.uk/~yg244/16bioinfo NA NA NA NA NA NA 28095781 BMC Bioinformatics 2017
100 37.65 896 FD dataset Drug Drug: drug perturbation gene expression level, structural fingerprint and physicochemical property DAMT-Model Convolutional Neural Network (CNN),Domain-adversarial learning,Bidirectional LSTM (Bi-LSTM) Drug Disease Association (DDA) https://github.com/JohnnyY8/DAMT-Model NA NA NA NA NA NA 31999334 Bioinformatics 2020
100 37.65 896 SMDC Drug Drug: drug perturbation gene expression level, structural fingerprint and physicochemical property DAMT-Model Convolutional Neural Network (CNN),Domain-adversarial learning,Bidirectional LSTM (Bi-LSTM) Drug Disease Association (DDA) https://github.com/JohnnyY8/DAMT-Model NA NA NA NA NA NA 31999334 Bioinformatics 2020
101 30.5 604 Yamanishi Drug, Disease, Target NA Heter-LP Label Propagation Drug Target Interaction (DTI),Drug Disease Association (DDA) NA NA NA NA NA NA NA 30547450 Methods Mol Biol 2019
102 27.6 1110 NA Drug, Disease, Gene, Pathway, Side-effect NA NA Support Vector Machine (SVM),Decision Tree (DT),Random Forest (RF) Drug Disease Association (DDA) NA NA NA NA NA NA NA 32674665 Health Informatics J 2020
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