The search result for the key word "NA"

A total of 134 results found based on your keywords
Recommendation ID Data Information Model Information Application Information Reference
Rank Total_Score Model_ID Dataset_Name Element_type Data_features Model_name Algorithm_name Prediction_type Code_source Study_types Disease_name Target_name Drug_name Interaction_type Recommended_Number PMID Journal Publication_Year
1 68.1 467 NA Drug, Target, Side-effect Drug: chemical properties, target targets, side-effect NA Pareto dominance,Collaborative filtering Drug Disease Association (DDA) NA NA NA NA NA Drug disease interaction Top 20 predictions 29649971 BMC Bioinformatics 2018
2 65.5 2087 NA Drug, Disease, Target, Side-effect Drug: SMILES, Target: the amino acid sequences BG-DTI Convolutional Neural Network (CNN),Graph Neural Network (GNN),Graph Attention Network (GAT),Support Vector Machine (SVM) Drug Target Interaction (DTI) https://github.com/wyx2012/BG-DTI NA NA NA NA NA NA 37764321 Molecules 2023
3 64.5 968 Fdataset (Dataset 2) Drug, Disease, Target Drug: SMILES, Target: target sequence Disease: MeSH iDrug Matrix Completion Drug Target Interaction (DTI) https://github.com/Case-esaC/iDrug NA NA NA NA NA NA 32667925 PLoS Comput Biol 2020
3 64.5 968 Dataset 1 Drug, Disease, Target Drug: SMILES, Target: target sequence Disease: MeSH iDrug Matrix Completion Drug Target Interaction (DTI) https://github.com/Case-esaC/iDrug NA NA NA NA NA NA 32667925 PLoS Comput Biol 2020
4 62.5 736 Fdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms ANMF Additional Neural Matrix Factorization Drug Disease Association (DDA) https://github.com/MortySn/ANMF NA NA NA NA NA NA 31412762 BMC Bioinformatics 2019
4 62.5 736 Cdataset Drug, Disease Drug: SMILES, Diseases: MeSH terms ANMF Additional Neural Matrix Factorization Drug Disease Association (DDA) https://github.com/MortySn/ANMF NA NA NA NA NA NA 31412762 BMC Bioinformatics 2019
5 60.9 1340 NR Drug, Target Drug: SMILES, Target: Sequence DTI-MLCD Random Forest (RF) Drug Target Interaction (DTI) https://github.com/a96123155/DTI-MLCD NA NA NA NA NA NA 32964234 Brief Bioinform 2021
5 60.9 1340 E Drug, Target Drug: SMILES, Target: Sequence DTI-MLCD Random Forest (RF) Drug Target Interaction (DTI) https://github.com/a96123155/DTI-MLCD NA NA NA NA NA NA 32964234 Brief Bioinform 2021
5 60.9 1340 IC Drug, Target Drug: SMILES, Target: Sequence DTI-MLCD Random Forest (RF) Drug Target Interaction (DTI) https://github.com/a96123155/DTI-MLCD NA NA NA NA NA NA 32964234 Brief Bioinform 2021
5 60.9 1340 GPCR Drug, Target Drug: SMILES, Target: Sequence DTI-MLCD Random Forest (RF) Drug Target Interaction (DTI) https://github.com/a96123155/DTI-MLCD NA NA NA NA NA NA 32964234 Brief Bioinform 2021
6 60.5 1980 Ovarian Cancer Dataset Drug, Gene NA SPLNMTF (Self-Paced Non-negative Matrix Tri-Factorization) Matrix Factorization Drug Disease Association (DDA) https://github.com/qi0906/SPLNMTF NA NA NA NA NA NA 36445996 IEEE/ACM Trans Comput Biol Bioinform 2023
6 60.5 1980 Acute myeloid leukemia (AML) dataset Drug, Gene NA SPLNMTF (Self-Paced Non-negative Matrix Tri-Factorization) Matrix Factorization Drug Disease Association (DDA) https://github.com/qi0906/SPLNMTF NA NA NA NA NA NA 36445996 IEEE/ACM Trans Comput Biol Bioinform 2023
7 60.0875 2176 Yamanishi_IC Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
7 60.0875 2176 BindingDB Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
7 60.0875 2176 Yamanishi_NR Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
7 60.0875 2176 Davis Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
7 60.0875 2176 Yamanishi_E Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
7 60.0875 2176 DrugBank (version 5.1.9) Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
7 60.0875 2176 Yamanishi_GPCR Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
7 60.0875 2176 BIOSNAP Drug, Target Target: 20D Vector, Drug: SMILES geNnius (Graph Embedding Neural Network Interaction Uncovering System) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/ubioinformat/GeNNius NA NA NA NA NA NA 38134424 Bioinformatics 2024
8 59.6 415 Yamanishi_E Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
8 59.6 415 Yamanishi_NR Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
8 59.6 415 Yamanishi_IC Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
8 59.6 415 Kinase (K) dataset Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
8 59.6 415 Yamanishi_GPCR Drug, Target Drug: chemical sturcture, Target: target sequence BRDTI Bayesian Drug Target Interaction (DTI) https://github.com/lpeska/BRDTI NA NA NA NA NA NA 29054256 Comput Methods Programs Biomed 2017
9 58.5 1132 Fdataset Drug, Disease Drug: SMILES, Disease: medical description data HAMN (Hybrid Attentional Memory Network) Collaborative Filtering,Autoencoder Drug Disease Association (DDA) NA NA NA NA NA NA NA 33297947 BMC Bioinformatics 2020
9 58.5 1132 Cdataset Drug, Disease Drug: SMILES, Disease: medical description data HAMN (Hybrid Attentional Memory Network) Collaborative Filtering,Autoencoder Drug Disease Association (DDA) NA NA NA NA NA NA NA 33297947 BMC Bioinformatics 2020
10 57 1719 Own dataset Drug, Target Drug: side-effects, drug chemical structure, drug physicochemical properties and therapeutic properties, Target: co-pathway, PPI network, Gene Ontology and gene-encoded target sequence DTI-HETA Graph Neural Network (GNN),Graph Attention Network (GAT) Drug Target Interaction (DTI) https://github.com/ZhangyuXM/DTI-HETA NA NA NA NA NA NA 35380622 Brief Bioinform 2022
10 57 2144 Davis Drug, Target Drug: SMILES, Target: The amino acid Sequence. TeM-DTBA (Time-efficient Multimodal Drug Target Binding Affinity) Multi Layer Perception (MLP) Drug Target binding Affinity (DTA) https://github.com/hkmztrk/DeepDTA/tree/master/data. NA NA NA NA NA NA 37777631 J Comput Aided Mol Des 2023
10 57 1719 Yamanishi_E Drug, Target Drug: side-effects, drug chemical structure, drug physicochemical properties and therapeutic properties, Target: co-pathway, PPI network, Gene Ontology and gene-encoded target sequence DTI-HETA Graph Neural Network (GNN),Graph Attention Network (GAT) Drug Target Interaction (DTI) https://github.com/ZhangyuXM/DTI-HETA NA NA NA NA NA NA 35380622 Brief Bioinform 2022
10 57 2144 KIBA Drug, Target Drug: SMILES, Target: The amino acid Sequence. TeM-DTBA (Time-efficient Multimodal Drug Target Binding Affinity) Multi Layer Perception (MLP) Drug Target binding Affinity (DTA) https://github.com/hkmztrk/DeepDTA/tree/master/data. NA NA NA NA NA NA 37777631 J Comput Aided Mol Des 2023
10 57 1719 Yamanishi_IC Drug, Target Drug: side-effects, drug chemical structure, drug physicochemical properties and therapeutic properties, Target: co-pathway, PPI network, Gene Ontology and gene-encoded target sequence DTI-HETA Graph Neural Network (GNN),Graph Attention Network (GAT) Drug Target Interaction (DTI) https://github.com/ZhangyuXM/DTI-HETA NA NA NA NA NA NA 35380622 Brief Bioinform 2022
11 56.76 1695 Yamanishi_NR Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
11 56.76 1695 CheMBL Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
11 56.76 1695 Yamanishi_E Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
11 56.76 1695 Yamanishi_IC Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
11 56.76 1695 Yamanishi_GPCR Drug, Target Drug: chemical substructures, Target: the primary sequences DT2Vec XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2Vec NA NA NA NA NA NA 35379165 BMC Bioinformatics 2022
12 55.5 816 NA Drug, Target Drug: chemical structure, Target: GO terms OCSVM (One-class Support Vector Machine) Support Vector Machine (SVM) Drug Target Interaction (DTI) Additional file 4 NA NA NA NA NA NA 31881829 BMC Bioinformatics 2019
13 55 1674 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences Affinity2Vec XGBoost Drug Target binding Affinity (DTA) https://github.com/MahaThafar/Affinity2Vec NA NA NA NA NA NA 35306525 Sci Rep 2022
13 55 1674 KIBA Drug, Target Drug: SMILES, Target: the amino acid sequences Affinity2Vec XGBoost Drug Target binding Affinity (DTA) https://github.com/MahaThafar/Affinity2Vec NA NA NA NA NA NA 35306525 Sci Rep 2022
14 54.5 1567 NeoDTI Drug, Disease, Target, Side-effect Drug: SMILES, Target: target sequence MultiDTI (Multi-modal DTI) Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/Deshan-Zhou/MultiDTI/ NA NA NA NA NA NA 34180970 Bioinformatics 2021
15 53.5 586 NA Drug, Disease Drug: PubChem fingerprints, Disease: MeSH DrPOCS (projection onto convex sets) Matrix Completion Drug Disease Association (DDA) NA NA NA NA NA NA NA 29993698 IEEE/ACM Trans Comput Biol Bioinform 2019
15 53.5 475 Dataset 1 Drug, Disease Drug: drug substructures, target target functional domain and GO annotations, Diseases: MeSH terms DR2DI Regularized Kernel Classifier Drug Disease Association (DDA) https://github.com/huayu1111/DR2DI NA NA NA NA NA NA 29687309 J Comput Aided Mol Des 2018
16 53 1748 C.elegans Drug, Target Drug: SMILES, Target: the amino acid sequences MHSADTI Graph Attention Network (GAT),Multi-head self-attention mechanism Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33956632 IEEE/ACM Trans Comput Biol Bioinform 2022
16 53 856 LRSSL Drug, Disease Drug: chemical structure, drug target domain, drug target gene ontology (GO); Disease: semantic DDAPRED Logistic Matrix Factorization Drug Disease Association (DDA) https://github.com/nongdaxiaofeng/DDAPRED NA NA NA NA NA NA 32062701 J Mol Model 2020
16 53 1748 DUD-E Drug, Target Drug: SMILES, Target: the amino acid sequences MHSADTI Graph Attention Network (GAT),Multi-head self-attention mechanism Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33956632 IEEE/ACM Trans Comput Biol Bioinform 2022
16 53 1748 DrugBank Drug, Target Drug: SMILES, Target: the amino acid sequences MHSADTI Graph Attention Network (GAT),Multi-head self-attention mechanism Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33956632 IEEE/ACM Trans Comput Biol Bioinform 2022
16 53 1748 Human Drug, Target Drug: SMILES, Target: the amino acid sequences MHSADTI Graph Attention Network (GAT),Multi-head self-attention mechanism Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33956632 IEEE/ACM Trans Comput Biol Bioinform 2022
17 52.98571429 973 dataset1_NR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 Yamanishi_NR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 dataset1_TR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 dataset1_CR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 dataset1_E Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 Yamanishi_E Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 dataset2_David Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 dataset2_Ketz Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 dataset1_CSM Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 dataset1_IC Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 Yamanishi_IC Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 Yamanishi_GPCR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 dataset1_PK Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
17 52.98571429 973 dataset1_GPCR Drug, Target Drug: chemical sturcture, Target: target sequence DTIP_MDHN Index kernel matrix Drug Target Interaction (DTI) NA NA NA NA NA NA NA 32703151 BMC Bioinformatics 2020
18 52.75 1659 PDBBind Drug, Target Drug: SMILES, Target: the amino acid sequences GEFA (Graph Early Fusion Affinity) Graph Convolutional Network (GCN) Drug Target binding Affinity (DTA) https://github.com/ngminhtri0394/GEFA NA NA NA NA NA NA 34197324 IEEE/ACM Trans Comput Biol Bioinform 2022
18 52.75 1659 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences GEFA (Graph Early Fusion Affinity) Graph Convolutional Network (GCN) Drug Target binding Affinity (DTA) https://github.com/ngminhtri0394/GEFA NA NA NA NA NA NA 34197324 IEEE/ACM Trans Comput Biol Bioinform 2022
19 52.4 1717 D1 Drug, Target NA MccDTI Deep Autoencoder,Matrix Completion Drug Target Interaction (DTI) https://github.com/ShangCS/MccDTI NA NA NA NA NA NA 35262678 Brief Bioinform 2022
19 52.4 1717 D2 Drug, Target NA MccDTI Deep Autoencoder,Matrix Completion Drug Target Interaction (DTI) https://github.com/ShangCS/MccDTI NA NA NA NA NA NA 35262678 Brief Bioinform 2022
20 51.85 1518 DrugBank Drug, Target Drug: SMILES, Target: the amino acid sequences DTI-End-to-End-DL Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/larngroup/DTI-End-to-End-DL NA NA NA NA NA NA 32142454 IEEE/ACM Trans Comput Biol Bioinform 2021
20 51.85 1518 Yamanishi Drug, Target Drug: SMILES, Target: the amino acid sequences DTI-End-to-End-DL Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/larngroup/DTI-End-to-End-DL NA NA NA NA NA NA 32142454 IEEE/ACM Trans Comput Biol Bioinform 2021
20 51.85 1518 BioLip Drug, Target Drug: SMILES, Target: the amino acid sequences DTI-End-to-End-DL Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/larngroup/DTI-End-to-End-DL NA NA NA NA NA NA 32142454 IEEE/ACM Trans Comput Biol Bioinform 2021
20 51.85 1518 BindingDB Drug, Target Drug: SMILES, Target: the amino acid sequences DTI-End-to-End-DL Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/larngroup/DTI-End-to-End-DL NA NA NA NA NA NA 32142454 IEEE/ACM Trans Comput Biol Bioinform 2021
21 51.5 1838 BindingDB Drug, Target Drug: SMILES, Target: the amino acid sequences DeepLPI Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Target Interaction (DTI) https://github.com/David-BominWei/DeepLPI NA NA NA NA NA NA 36307509 Sci Rep 2022
21 51.5 1838 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences DeepLPI Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Target Interaction (DTI) https://github.com/David-BominWei/DeepLPI NA NA NA NA NA NA 36307509 Sci Rep 2022
21 51.5 1838 COVID19-One Drug, Target Drug: SMILES, Target: the amino acid sequences DeepLPI Convolutional Neural Network (CNN),Bidirectional Long Short-Term Memory (Bi-LSTM) Drug Target Interaction (DTI) https://github.com/David-BominWei/DeepLPI NA NA NA NA NA NA 36307509 Sci Rep 2022
22 51 1678 KIBA Drug, Target Drug: 2D chemical structure, Target: sequence NerLTR-DTA Learning To Rank (LTR) Drug Target binding Affinity (DTA) https://github.com/RUXIAOQING964914140/NerLTR-DTA NA NA NA NA NA NA 35134828 Bioinformatics 2022
22 51 1678 Davis Drug, Target Drug: 2D chemical structure, Target: sequence NerLTR-DTA Learning To Rank (LTR) Drug Target binding Affinity (DTA) https://github.com/RUXIAOQING964914140/NerLTR-DTA NA NA NA NA NA NA 35134828 Bioinformatics 2022
23 50.5 2000 NA Drug, Disease, Target Drug: SMILES, Target: the amino acid sequences DT2Vec+ XGBoost Drug Target Interaction (DTI) https://github.com/elmira-amiri/DT2VecPlus NA NA NA NA NA NA 37193964 BMC Bioinformatics 2023
23 50.5 794 NA Drug, Target Drug: SMILES, Proten: the amino acid sequence BANDIT Bayesian Drug Target Interaction (DTI) Select pieces of custom code can be made available upon request. NA NA NA NA NA NA 31745082 Nat Commun 2019
24 50.3 1787 DrugBank Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
24 50.3 1787 Yamanishi_IC Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
24 50.3 1787 Yamanishi_GPCR Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
24 50.3 1787 Yamanishi_NR Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
24 50.3 1787 Yamanishi_E Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
24 50.3 1787 KEGG Drug, Target Drug: chemical structure, target: protein sequence Ro-DNILMF Integrated logistic matrix factorization Drug Target Interaction (DTI) https://github.com/LJX0326/Ro-DNILMF.git NA NA NA NA NA NA 36014371 Molecules 2022
25 50.05 187 BindingDB Drug, Target Target: Fingerprint WES Bayesian network and multi-variate kernel approach Drug Target Interaction (DTI) NA NA NA NA NA NA NA 26155766 Sci Rep 2015
25 50.05 187 External data Drug, Target Target: Fingerprint WES Bayesian network and multi-variate kernel approach Drug Target Interaction (DTI) NA NA NA NA NA NA NA 26155766 Sci Rep 2015
26 50 1343 Davis Drug, Target Drug: (the atom symbol, the number of adjacent atoms, the number of adjacent hydrogens, the implicit value of the atom, and whether the atom is in an aromatic structure), Target: (ASCII character string) GraphDTA Graph Neural Network (GNN) Drug Target binding Affinity (DTA) https://github.com/thinng/GraphDTA NA NA NA NA NA NA 33119053 Bioinformatics 2021
26 50 1343 KIBA Drug, Target Drug: (the atom symbol, the number of adjacent atoms, the number of adjacent hydrogens, the implicit value of the atom, and whether the atom is in an aromatic structure), Target: (ASCII character string) GraphDTA Graph Neural Network (GNN) Drug Target binding Affinity (DTA) https://github.com/thinng/GraphDTA NA NA NA NA NA NA 33119053 Bioinformatics 2021
27 49.5 1203 NA Drug, Virus NA IRNMF (Indicator Regularized non-negative Matrix Factorization) Non-negative Matrix Factorization (NMF) Drug Virus Association (DVA) https://github.com/dukebai/IRNMF NA NA NA NA NA NA 33584672 Front Immunol 2021
28 49 559 MULAN Drug, Disease, Gene Chemical: Extended Connectivity Fingerprint (ECFP), Gene: amino acid sequence ANTENNA Dual-regularized weighted,Imputed One Class Collaborative Filtering (OCCF) algorithm,Random Walk Restart Drug Disease Association (DDA) NA NA NA NA NA NA NA 29993812 IEEE/ACM Trans Comput Biol Bioinform 2018
28 49 1834 BIOSNAP Drug, Target Drug: SMILES, Target: the amino acid sequences ICAN (Interpretable Cross-Attention Network) Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/kuratahiroyuki/ICAN NA NA NA NA NA NA 36279284 PLoS One 2022
28 49 1834 Davis Drug, Target Drug: SMILES, Target: the amino acid sequences ICAN (Interpretable Cross-Attention Network) Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/kuratahiroyuki/ICAN NA NA NA NA NA NA 36279284 PLoS One 2022
28 49 64 Fdataset Drug, Disease Drug: structure chemical, target, side-effect, Diseases: MeSH terms PreDR (Predict Drug Repositioning) Support Vector Machine (SVM) Drug Disease Association (DDA) NA NA NA NA NA NA NA 24244318 PLoS One 2013
28 49 1834 BindingDB Drug, Target Drug: SMILES, Target: the amino acid sequences ICAN (Interpretable Cross-Attention Network) Convolutional Neural Network (CNN) Drug Target Interaction (DTI) https://github.com/kuratahiroyuki/ICAN NA NA NA NA NA NA 36279284 PLoS One 2022
29 48.8 1914 Hetero-B Drug, Disease, Target, Side-effect NA MHGNN (Metapath-aggregated Heterogeneous Graph Neural Network) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/Zora-LM/MHGNN-DTI NA NA NA NA NA NA 36592060 Brief Bioinform 2023
29 48.8 1914 Hetero-C Drug, Target, Gene, Side-effect NA MHGNN (Metapath-aggregated Heterogeneous Graph Neural Network) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/Zora-LM/MHGNN-DTI NA NA NA NA NA NA 36592060 Brief Bioinform 2023
29 48.8 1914 Hetero-A Drug, Disease, Target, Side-effect NA MHGNN (Metapath-aggregated Heterogeneous Graph Neural Network) Graph Neural Network (GNN) Drug Target Interaction (DTI) https://github.com/Zora-LM/MHGNN-DTI NA NA NA NA NA NA 36592060 Brief Bioinform 2023
30 48.35 1235 dataset 1 Drug, Target Drug: constitutional, topological, and geometrical descriptors; Target: amino acid, pseudo-amino acid, and CTD (composition, transition, distribution) descriptors DTI-SNNFRA Shared nearest neighbors and fuzzy-rough approximation Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33606741 PLoS One 2021
30 48.35 1235 dataset 2 Drug, Target Drug: constitutional, topological, and geometrical descriptors; Target: amino acid, pseudo-amino acid, and CTD (composition, transition, distribution) descriptors DTI-SNNFRA Shared nearest neighbors and fuzzy-rough approximation Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33606741 PLoS One 2021
31 47.5 1795 NA Drug, Disease, Target, Side-effect, Substructure NA MGATRx Graph Neural Network (GNN) Drug Disease Association (DDA) https://github.com/yellajaswanth/MGATRx NA NA NA NA NA NA 34014830 IEEE/ACM Trans Comput Biol Bioinform 2022
32 47 723 Yamanishi_IC Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
32 47 723 Yamanishi_GPCR Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
32 47 723 Yamanishi_NR Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
32 47 723 Yamanishi_E Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
32 47 723 Kuang's dataset Drug, Target NA SPLCMF (Self-paced learning with collaborative matrix factorization) Matrix Factorization Drug Target Interaction (DTI) https://github.com/Macau-LYXia/SPLCMF-DTI NA NA NA NA NA NA 31260620 J Chem Inf Model 2019
33 46.75 2132 Fdataset Drug, Disease NA IDDI-DNN Convolutional Neural Network (CNN) Drug Disease Association (DDA) NA NA NA NA NA NA NA 37993777 BMC Bioinformatics 2023
33 46.75 2132 DNdataset Drug, Disease NA IDDI-DNN Convolutional Neural Network (CNN) Drug Disease Association (DDA) NA NA NA NA NA NA NA 37993777 BMC Bioinformatics 2023
34 46.7 1221 NDF-RT Drug, Disease NA IntegratedSim Similarity-fusion methods Drug Drug Interaction (DDI) NA NA NA NA NA NA NA 33557749 BMC Bioinformatics 2021
34 46.7 1221 PMID: 24551427 Drug, Target, Side-effect Drug(structure, target, side-effect) IntegratedSim Similarity-fusion methods Drug Drug Interaction (DDI) NA NA NA NA NA NA NA 33557749 BMC Bioinformatics 2021
35 46.56 1658 Yamanishi_IC Drug, Target NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
35 46.56 1658 Yamanishi_GPCR Drug, Target NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
35 46.56 1658 Yamanishi_NR Drug, Target NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
35 46.56 1658 DTI-HN Drug, Disease, Target, Side-effect NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
35 46.56 1658 Yamanishi_E Drug, Target NA IMCHGAN (Inductive Matrix Completion with Heterogeneous Graph Attention Network) Graph Attention Network (GAT),Inductive Matrix Completion (IMC) Drug Target Interaction (DTI) https://github.com/ljatynu/IMCHGAN/ NA NA NA NA NA NA 34115592 IEEE/ACM Trans Comput Biol Bioinform 2022
36 45 1220 NA Drug, Disease, Gene NA SAveRUNNER (Searching off-lAbel dRUg aNd NEtwoRk) Bi-Random walk-based algorithm Drug Disease Association (DDA) NA NA NA NA NA NA NA 33544720 PLoS Comput Biol 2021
37 44 1550 Luo's dataset Drug, Disease, Target, Side-effect NA KGE_NFM Neural Factorization Machine (NFM) Drug Target Interaction (DTI) https://zenodo.org/record/5500305 NA NA NA NA NA NA 34811351 Nat Commun 2021
37 44 1886 Fdataset Drug, Disease NA NMFDR (Neural Metric Factorization model for computational Drug Repositioning) Matrix Factorization Drug Disease Association (DDA) NA NA NA NA NA NA NA 35061591 IEEE/ACM Trans Comput Biol Bioinform 2023
37 44 1886 Cdataset Drug, Disease NA NMFDR (Neural Metric Factorization model for computational Drug Repositioning) Matrix Factorization Drug Disease Association (DDA) NA NA NA NA NA NA NA 35061591 IEEE/ACM Trans Comput Biol Bioinform 2023
37 44 1886 DNdataset Drug, Disease NA NMFDR (Neural Metric Factorization model for computational Drug Repositioning) Matrix Factorization Drug Disease Association (DDA) NA NA NA NA NA NA NA 35061591 IEEE/ACM Trans Comput Biol Bioinform 2023
38 42.4 465 NA Drug, Target, Gene, Side-effect Drug: Chemical structure, target, Gene, side-effect NA Growing Self Organizing Map (GSOM) Drug Drug Interaction (DDI) https://github.com/fathimanush786/two_tiered_clustrering_data NA NA NA NA NA NA 29642848 BMC Bioinformatics 2018
39 41.66 1473 Yamanishi_IC Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
39 41.66 1473 Yamanishi_GPCR Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
39 41.66 1473 Yamanishi_NR Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
39 41.66 1473 Olayan RS Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
39 41.66 1473 Yamanishi_E Drug, Target NA DTI-HeNE (DTI based on Heterogeneous Network Embedding) Random Forest (RF) Drug Target Interaction (DTI) https://github.com/arantir123/DTI-hene/ NA NA NA NA NA NA 34479477 BMC Bioinformatics 2021
40 40.7 1307 NA Drug, Target Drug: 2-D structural representations, CSConv2d Convolutional Block Attention Module (CBAM) Drug Target Interaction (DTI) NA NA NA NA NA NA NA 33925310 Biomolecules 2021
41 40.5 142 NA Drug, Disease, Gene NA NA Matrix Factorization Drug Disease Association (DDA) NA NA NA NA NA NA NA 26078775 Comput Math Methods Med 2015
42 39.2 154 NA Drug Drug: chemical structure NA Markov Clustering Drug Drug Interaction (DDI) NA NA NA NA NA NA NA 24934184 Chem Biol Drug Des 2015
43 38 50 MATADOR Drug, Target NA RBM model Restricted Boltzmann Machine Drug Target Interaction (DTI) NA NA NA NA NA NA NA 23812976 Bioinformatics 2013
43 38 50 STITCH Drug, Target NA RBM model Restricted Boltzmann Machine Drug Target Interaction (DTI) NA NA NA NA NA NA NA 23812976 Bioinformatics 2013
44 37.8 328 MATADOR Drug, Target Drug: pubchem ID, Target: target ID(MeSH, STRING 7) NA Common Neighbours,Jaccard Index,Preferential Attachment,Katz Index Drug Target Interaction (DTI) http://www.cl.cam.ac.uk/~yg244/16bioinfo NA NA NA NA NA NA 28095781 BMC Bioinformatics 2017
45 37.65 896 FD dataset Drug Drug: drug perturbation gene expression level, structural fingerprint and physicochemical property DAMT-Model Convolutional Neural Network (CNN),Domain-adversarial learning,Bidirectional LSTM (Bi-LSTM) Drug Disease Association (DDA) https://github.com/JohnnyY8/DAMT-Model NA NA NA NA NA NA 31999334 Bioinformatics 2020
45 37.65 896 SMDC Drug Drug: drug perturbation gene expression level, structural fingerprint and physicochemical property DAMT-Model Convolutional Neural Network (CNN),Domain-adversarial learning,Bidirectional LSTM (Bi-LSTM) Drug Disease Association (DDA) https://github.com/JohnnyY8/DAMT-Model NA NA NA NA NA NA 31999334 Bioinformatics 2020
46 30.5 604 Yamanishi Drug, Disease, Target NA Heter-LP Label Propagation Drug Target Interaction (DTI),Drug Disease Association (DDA) NA NA NA NA NA NA NA 30547450 Methods Mol Biol 2019
47 27.6 1110 NA Drug, Disease, Gene, Pathway, Side-effect NA NA Support Vector Machine (SVM),Decision Tree (DT),Random Forest (RF) Drug Disease Association (DDA) NA NA NA NA NA NA NA 32674665 Health Informatics J 2020
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