dbGVOSCC
A genetic variation database for oral squamous cell carcinoma
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Variation Name
All Variations
(GT)n repeat allele in HO-1 promoter
06 -MGMT hypermethylation
10p12 deletion
10p13-p12.2 amplification
11p12 amplification
11p15 gain
11q gain
11q11 amplification
11q13 amplification
11q13 gain
11q13.1-q13.2 amplification
11q13.3 amplification
11q13.3-q13.4 amplification
11q13.4 amplification
11q22 gain
11q23-25 deletion
12p13.31 amplification
12q14 amplification
12q15 amplification
12q22 deletion
12q24 amplification
14q11 amplification
14q23-32 amplification
16p13.3 gain
16q22 amplification
17q21.2 deletion
18q11.2 deletion
1p21 deletion
1p36 deletion
1pTEL deletion
1q21.3 mutation
1q25 deletion
1q31 amplification
20p11.3 RPN2 loss of heterozygosity (LOH)
20p13 amplification
20q amplification
20q gain
20q12-13.1 D20S48 loss of heterozygosity (LOH)
20q13.3 gain
21q deletion
22q deletion
22q11 amplification
22q11 gain
22q13 amplification
2p25.1 gain
2q14-21 heterozygosity
2q36 heterozygosity
3p deletion
3p14 loss
3p21.31 deletion
3p22 loss
3p25-p26 loss of heterozygosity (LOH)
3p26.3-p26.1 deletion
3q gain
3q13.32-q21.2 amplification
3q21-29 amplification
3q21.2-q26.1 amplification
3q25.31-q26.1 amplification
3q26.1-q26.31 amplification
3q27.3-q28 amplification
45S rDNA mutation
4q35.2 loss
5-hydroxymethylcytosine (5hmC)
5-methylcytosine (5mC)
5p13.1 amplification
5p13.2-p13.1 amplification
5p13.3-p13.2 amplification
5p15 amplification
5p15 gain
5p15.33 gain
5q gain
5q11-12 deletion
5q14-15 deletion
5q31 deletion
6q16.3 deletion
7p gain
7p11 gain
7p11.2 amplification
7p12 amplification
7p22 gain
7p22.1-p11.2 amplification
7p22.3 gain
7p22.3-p22.1 amplification
7q34 deletion
7q35 amplification
8p21-22 deletion
8p23.2 deletion
8q gain
8q11.21-q12.1 amplification
8q12.1 amplification
8q21-24 amplification
8q21.1-24.3 gain
8q21.13-q21.2 amplification
8q21.2-q21.3 amplification
8q22.2~24.3 amplifications
8q22.3-q23.1 amplification
8q23.1-q24.11 amplification
8q24 gain
8q24.12-q24.13 amplification
8q24.13 amplification
8q24.3 amplification
9p12 amplification
9p21 deletion
9p21.1-p13.3 amplification
9q34 ABO Loss of heterozygosity (LOH)
9q34.3 gain
ABCA2 methylation
ABCA5 deletion
ABO promoter hypermethylation
ACTA1 promoter methylation
ACTN1 silencing
ACTN2 hypermethylation
ACTN2 promoter methylation
ADAM32 mutation
ADCK4 methylation
Adgrb3(BAI3) SNV
ADGRG1 mutation
ADH1B mutation
ADH1C HaeIII polymorphisms
ADH1C mutation
ADH1C SspI*2/*2 polymorphisms
AIB1 at 20q gain
AIM2 hypomethyaltion
AJAP1 methylation
AKAP9 mutation
AKR7L mutation
AKT1 CNV
ALDH2 (non G/G)
ALDOC Arg42 mutation
ALDOC Lys147 mutation
ALKBH1 amplification
ALKBH1 CNV
ALKBH3 CNV
ALYREF deletion
ANAPC2 mutation
ANKRA2 mutation
ANO1 CNV
AP5M1 mutation
APAF-1 methylation
APC A545A mutation
APC D1822Vmutation
APC L335L mutation
APC methylation
APC mutation
APC promoter methylation
APC T1493T mutation
APC T496T mutation
APC Y191Y mutation
APC Y486Y mutation
APE-Asp149Glu polymorphism
APEX1(APE1) CNV
ARHGAP21 mutation
ARHGEF39 mutation
ARID2 mutation
ASXL1 mutation
ATM mutation
ATM promoter methylation
ATP13A3 mutation
ATP2A2 methylation
ATP7A CNV
ATP7A mutation
ATP7B CNV
ATP7B mutation
AXIN1 codon 254 polymorphism
AXIN1 codon 429 polymorphism
AXIN1 codon 525 polymorphism
AXIN1 codon 609 polymorphism
AXIN1 heterozygous mutation at codon 488 in exon 5
AXIN1 heterozygous mutation in intron 7
AXIN1 intron 4+17 polymorphism
AXIN1 mutation
AXIN1 nucleotide 324 in exon 1
AXIN1 substitution at the intron 5+26
BAG1 amplification
BAG1 deletion
BCAP31 mutation
BCL6 mutation
BCR mutation
Beclin1 (BECN1) silencing
BEX1 methylation
BEX4 histone acetylation
BEX4 methylation
BIRC5 methylation
BIRC5 mutation
BIRC6 mutation
BMI1 m6A methylation
BRAF CNV
BRAF missense mutation
BRAF mutation
BRCA1 CNV
BRCA1 mutation
BRCA2 methylation
BRCA2 mutation
BRD4 mutation
BRINP2 SNV
C-deletion mutation at exon 4 of codon 63 of the p53
C-deletion mutation in exon 4 codon 63 of p53
c-erb-B2 mutation
c-erbB2 amplification
c-MYC amplification
c-MYC gain
c-MYC mutation
CA3 promoter methylation
CACNA1H methylation
CADM1 CNV
CADM1 methylation
CADM1 promoter methylation
CALCA hypermethylation
CAP2 SNV
CAPN7 mutation
CASD1 methylation
CASP8 mutation
CASPASE8 deletion
CASR CNV
CCDN1 mutation
CCND1 A/G870
CCND1 A870G mutation
CCND1 amplification
CCND1 CNV
CCND1 G870A mutation
CCND1 gain
CCND1 GG870
CCND1 mutation
CCND2 CNV
CCNJL methylation
CCR2 variants
CCR5 59029 mutation
CCR5-delta32 mutation
CD133(PROM1) promoter hypermethylation
CD147 (BSG) promoter hypermethylation
CD22 hypomethylation
CD24 promoter hypermethylation
CD28 hypomethylation
CD80 hypomethylation
CDC27 mutation
CDH1 (rs16260)
CDH1 mutation
CDH1 promoter methylation
CDH13 CNV
CDH2 (rs11564299)
CDK6 gain
CDKN1B gain
CDKN2A (P16 ) hypermethylation
CDKN2A amplification
CDKN2A CNV
CDKN2A deletion
CDKN2A frame-shift mutation
CDKN2A gene mutation
CDKN2A methylation
CDKN2A missense mutation
CDKN2A mutation
CDKN2A nonsense mutation
CDKN2A SNV
CDKN2A splice-site mutation
CDKN2A truncation mutation
CDKN2A/p16 mutations
CDKN2B CNV
CDKN2B mutation
CDSN hypomethylation
CEACAM1 hypomethyaltion
CELSR1 SNV
CELSR3 amplification
CELSR3 hypermethylation
CELSR3 methylation
CELSR3 SNV
CENPV methylation
CGAS mutation
CHD1 mutation
CHFR CNV
CHFR methylation
CHFR promoter methylation
Chr.3 D3S966 loss of heterozygosity
CHRDL1 deletion
Chromosome 15 CpG loci cg02319972 methylation
Chromosome 17 trisomy
CHUK mutation
CIR1 mutation
CKAP2L deletion
CKAP2L gain
CKMT1 hypermethylation
CKMT2 promoter methylation
CLDN1 CNV
CLK1 promoter methylation
CLTA amplification
CLTCL1 mutation
CMTM3 hypermethylation
COL1A1 amplification
COL5A2 mutation
COL6A4 (COL6A4P1) amplification
COL6A4 (COL6A4P1) SNV
COX-2 -1195G/A
COX-2 -765G/C
COX-2 8473C/T
COX-2 mutation
COX2 -1195 polymorphisms
COX2 -765 polymorphisms
COX7A1 promoter methylation
CPNE1 mutation
CRB1 mutation
CREBBP mutation
CSMD1 CNV
CSMD1 SNV
CSMD2 SNV
CSMD3 mutation
CTCF mutation
CTDSP1 hypermethylation
CTLA-4 polymorphism
CTLA4 hypomethylation
CTNNB1 mutation
CTTN CNV
CTTNBP2NL deletion
Cyclooxygenase-2 765G>G
CYGBmethylation
CYP1A1 (m2/ m2)
CYP1A1 m2/m2
CYP1A1 polymorphism
CYP26B1 polymorphisms
CYP2E1 Ins polymorphisms
CYP2E1 RsaI polymorphisms
Cytoglobin methylation
DACT1 methylation
DACT2 methylation
DAP kinase methylation
DAPK methylation
DAPK1 methylation
DBCCR1 hypermethylation
DBT CNV
DBT mutation
DCC methylation
DCC promoter methylation
DDAH2 methylation
DDEF1 deletion
DDOST mutation
DDR1 amplification
DDR1 SNV
DDX11 mutation
DDX3X recurrent homozygous deletion
DDX42 mutation
Deletion at chromosome 3q26.1
Deletion of 181,257,187-181,247,386 at 5q35.3
DKK2 promoter methylation
DKK4 promoter methylation
DLAT CNV
DLAT mutation
DLD CNV
DLST CNV
DLST mutation
DMD gain
DMRT1 CNV
DMRT3 CNV
DNAH6 SNV
DNAJC2 mutation
DNMT3B amplification
DNTTIP2 mutation
DOCK1 mutation
DPH1 mutation
DROSHA amplification
DSPP silencing
DUSP1 mutation
E-cad methylation
E-cad promoter hypermethylation
E-cadherin methylation
EC-SOD (C/G)
ECAD methylation
ECRG1 single nucleotide polymorphism
ECRG2 STR TCA3/TCA3
EDNRB deletion
EDNRB methylation
EDNRB promoter methylation
EGFR amplification
EGFR CA repeats polymorphism
EGFR CA SSR1
EGFR CNV
EGFR deletion
EGFR gain
EGFR mutation
EGFRvIII mutation
EIF2AK2 mutation
EIF4E3 deletion
ELAVL1 mutation
ELYS methylation
EMR3 hypomethyaltion
EMS1 gain
EPB41L3 methylation
EPCAM promoter methylation
EPHA2 mutation
EPHA5 hypermethylation
EPHX3 CpG islands methylation
EPHX3 hypermethylation
ERBB2 amplification
ERBB2 CNV
ERBB2 deletion
ERBB2 mutation
ERBB4 CNV
ERCC2 (XPD) mutation
ERCC5 (XPG) mutation
ERK methylation
ERMP1 CNV
ERRFI1 mutation
ESR1 methylation
EYA4 hypermethylation
FADD CNV
FADD promoter methylation
FAM5B amplification
FANCA mutation
FAS promoter methylation
FAT1 amplification
FAT1 deletion
FAT1 mutation
FAT1 SNV
FAT2 SNV
FAT4 SNV
FBXO3 deletion
FBXW7 frame-shift mutation
FBXW7 missense mutation
FBXW7 mutation
FBXW7 splice-site mutation
FBXW7 truncation mutation
FBXW7mutation
FDX1 CNV
FDX1 mutation
FGF10 deletion
FGF19 mutation
FGF3 CNV
FGF3 mutation
FGF4 CNV
FGF4/FGF3 gain
FGFR1 CNV
FGFR2 mutation
FGFR3 CNV
FGFR3 mutation
FGFR4 single nucleotide polymorphism
FLI1 CpG islands methylation
FLI1 hypermethylation
FLT1 methylation
FLT3 CNV
FLT3 methylation
FLT4 methylation
FOSL1 amplification
FOXA2 methylation
FOXC1 mutation
FOXD4 CNV
FOXK1 mutation
FOXL2 mutation
Frequent large-region-gain of 3q
Frequent large-region-gain of 5p
Frequent large-region-gain of 8q
Frequent large-region-loss of 3p
Frequent large-region-loss of 8p
Frequent large-region-loss of 9p
FRS2 amplification
GABBR1 methylation
Gain of 3q
Gain of 8q
Gain of 9q
GATA4 promoter hypermethylation
GATA5 CNV
GATA5 methylation
GATA5 promoter methylation
GATAD2B deletion
GBP1 mutation
GCSH CNV
GDF15 mutation
GDF5 amplification
GFRA1 promoter methylation
GNAI3 mutation
GNAQ mutation
GP1BB CpG islands methylation
GP1BB hypomethylation
GP1BB promoter methylation
GPR133 methylation
GPR29 hypomethylation
GPR87 mutation
GRM3 deletion
GRXCR1 mutation
GST-P hypermethylation
GSTA1 polymorphism
GSTM1 deletional variants
GSTM1 mutation
GSTM1 null
GSTM1 null polymorphism
GSTM1 polymorphism
GSTM1 [-]
GSTM3 AB + BB
GSTP1 gain
GSTP1 polymorphism
GSTT1 deletional variants
GSTT1 null
GSTT1 polymorphism
GSTT1 [-]
GTF2H5 mutation
H-ras mutation
H-ras point mutation
H3K4 me1 histone methylation
H3K4 me2 histone methylation
H3K4 me3 histone methylation
HBD-1 mutation
HDAC9 deletion
HER-2 mutation
Heterozygous deletions of CDH19
Heterozygous deletions of CDKN2A
HGFAC methylation
HIF-1a C1772T
HIF-1a G1790A
HIF-1alpha C1772T polymorphism
HIN-1 methylation
HLA-DPB1 hypermethylation
HMLH1 (MLH1) hypermethylation
HMLH1 (MLH1) promoter hypermethylation
HMOX-1 promoter polymorphism
HMSH2 hypermethylation
HNRNPH1 mutation
HO-1 long (GT)(n) repeat
HOGG1-Ser326Cys polymorphism
Homozygous deletion of GSTT1
Homozygous deletion of RB1CC1
Homozygous deletion of TP53
HORMAD2 methylation
HOXA11 hypermethylation
HOXA9 amplification
HOXA9 hypermethylation
HOXB13 amplification
HOXB4 methylation
HOXC4 methylation
HOXD10 hypermethylation
HOXD3 mutation
HOXD4 methylation
HRAS CNV
HRAS gene mutation
HRAS missense mutation
HRAS mutation
HS3ST2 hypermethylation
HTR1B hypermethylation
HTR2C deletion
IDH1 mutation
IDO1 methylation
IFNG hypomethyaltion
IGF2R polymorphisms
IL-1 beta (+3953C/T)
IL-10 (-1082A/G)
IL-10 -1082 mutation
IL-18 -137 G/C polymorphism
IL-18 -607 C/A polymorphism
IL-4 (-590C/T)
IL-4 -590 C/T
IL-6 (- 174) G/C gene polymorphism
IL-6 (- 572) G/C gene polymorphism
IL-6 (-174G/C)
IL-8 (-251A/T)
IL-8 (251 A/T) polymorphism
IL10 A1082G polymorphism
IL33 CNV
IL6 hypomethylation
ING5 mutation
INTS9 mutation
IRX4 amplification
ISL1 hypermethylation
ITGA3 amplification
ITGA4 amplification
ITGA4 CpG islands methylation
ITGA4 hypermethylation
IVL mutation
IVS4-30 del T deletion mutation
JAK2 CNV
JAK2 mutation
JMJD1C mutation
KANK1 CNV
KCNG4 mutation
KDM5B mutation
KDR methylation
Ki-ras codon 12 mutations
KIF11 methylation
KIF1A CpG islands methylation
KIF1A hypermethylation
KIF1A promoter methylation
KIT CNV
KIT mutation
KLF4 promoter hypermethylation
KLK3 gain
KLLN promoter methylation
KMT2D mutation
KRAS CNV
KRAS mutation
KRT13 promoter hypermethylation
KRT4 pre-mRNA methylation
L-10 polymorphism KT153594.1
L-10 polymorphism KT291742.1
L-10 polymorphism KT291743.1
L-MYC polymorphism
L1 promoter hypomethylation
LAMA1 SNV
LANCL2 CNV
LATS1 hypermethylation
LATS1 promoter methylation
LATS2 promoter hypermethylation
LATS2 promoter methylation
LCN2 promoter methylation
LDLRAD4 hypermethylation
LDOC1 promoter methylation
LDOC2 methylation
LGR5 splice variant
LHX1 hypermethylation
LIAS CNV
LINC00599 CpG islands methylation
LINC00599 hypermethylation
LINE-1 hypomethylation
LIPH1 CNV
lncRNA H19 hypomethylation
Loss of 18p
Loss of 3p
Loss of 8p
Loss of 9p
Loss of function mutations in CASP8
Loss of function mutations in FAT1
Loss of heterozygosity (LOH) at 21q
Loss of heterozygosity (LOH) at 21q11.1
Loss of heterozygosity (LOH) at 21q21
Loss of heterozygosity (LOH) at 21q22.1
Loss of heterozygosity (LOH) at 2q14-21
Loss of heterozygosity (LOH) at 2q32-35
Loss of heterozygosity (LOH) at 2q35
Loss of heterozygosity (LOH) at 2q36
Loss of heterozygosity (LOH) at 3p
Loss of heterozygosity (LOH) at 3p21.3
Loss of heterozygosity (LOH) at 3p25
Loss of heterozygosity (LOH) at 5p
Loss of heterozygosity (LOH) at 8p
Loss of heterozygosity (LOH) at 9p
Loss of heterozygosity (LOH) at 9q33
Loss of heterozygosity (LOH) at RB1
Loss of heterozygosity (LOH) at the 9p21 locus
Loss of heterozygosity of the APC gene
Loss of p16INK4A expression
LOXL2 mutation
LRP1 mutation
LRP1B methylation
LRP2 mutation
LRRC74A mutation
LRRFIP1 mutation
LRRTM1 CpG islands methylation
LRRTM1 hypermethylation
LSG1 mutation
LTF methylation
LXN hypermethylation
MAP2K1 mutation
MAP2K5 mutation
MAPK1 mutation
MCP-1 variants
MCPH1 methylation
MCPH1 promoter methylation
MDM2 amplification
MDM2 mutation
MDM2 splice variants
MDR1 methylation
MECOM amplification
MEG3 methylation
MET CNV
MET mutation
MGMT hypermethylation
MGMT Leu84Phe polymorphism
MGMT methylation
MGMT promoter hypermethylation
MGMT promoter methylation
MGMT Trp65Cys polymorphism
MICA mutation
MICAA6 mutation
MICU2 mutation
MINT1 methylation
MINT2 methylation
MINT27 methylation
MINT31 methylation
miR-10a CNV
miR-137 hypermethylation
miR-137 promoter methylation
miR-140-3p CNV
miR-149 CNV
miR-149 T>C (rs2292832)
miR-192 CNV
miR-196a2 C>T (rs11614913)
miR-200c-141 methylation
miR-29a CNV
miR-29c CNV
miR-34c-5p CNV
miR124-3 hypermethylation
miR137 promoter methylation
miR137HG hypermethylation
miR193 CpG islands methylation
miR193 hypermethylation
miR24-1 hypomethylation
miR296 CpG islands methylation
miR296 hypomethylation
miR375 promoter methylation
MIR4500 hypomethylation
MIR769 hypermethylation
MKI67 mutation
MLH1 mutation
MLL2 mutation
MLL4 mutation
MME hypermethylation
MMP gene cluster region on chromosome 11q amplification
MMP-1 1G/2G polymorphism
MMP-9 -1562 C>T polymorphism
MMP-9 1562 C/T
MMP13 promoter methylation
MMP20 silencing
Mn-SOD mutation
Monosomy of chromosome 17
MSH6 methylation
MSH6 promoter methylation
MT1A methylation
MTAP deletion
MTHFR C677 polymorphism
MTHFR C677T polymorphisms
MTHFR mutation
MTPAP mutation
MTS1 mutation
Mutation of TP53 exon 8 codon 282
MYC mutation
MYH11 hypermethylation
MYLK methylation
NAB1 mutation
NANOG CNV
NANOG promoter methylation
NCOR1 amplification
NEUROD4 deletion
NF1 mutation
NFE2L2 mutation
NFK-519 polymorphisms
NFKB1-94ins/delATTG
NID2 methylation
NID2 promoter methylation
NIT1 methylation
NLGN1 gain
NOMO1 mutation
NOP2 amplification
NOTCH1 3021_3034dup mutation
NOTCH1 3117_3132de mutation
NOTCH1 3967_3968dup mutation
NOTCH1 c.1016 mutation
NOTCH1 c.1019 mutation
NOTCH1 c.1020_1023 mutation
NOTCH1 c.1042 mutation
NOTCH1 c.1115 mutation
NOTCH1 c.1150 mutation
NOTCH1 c.1226 mutation
NOTCH1 c.1234 mutation
NOTCH1 c.1241 mutation
NOTCH1 c.1247 mutation
NOTCH1 c.1253 mutation
NOTCH1 c.1255+1 mutation
NOTCH1 c.1270 mutation
NOTCH1 c.1342 mutation
NOTCH1 c.1393 mutation
NOTCH1 c.1412 mutation
NOTCH1 c.1451 mutation
NOTCH1 c.1463 mutation
NOTCH1 c.1629 mutation
NOTCH1 c.1649 mutation
NOTCH1 c.1670-7 mutation
NOTCH1 c.1903+23_1903+33del mutation
NOTCH1 c.1978_1985dup mutation
NOTCH1 c.2272 mutation
NOTCH1 c.2815_2848del mutation
NOTCH1 c.2969+1 mutation
NOTCH1 c.3243 mutation
NOTCH1 c.3280 mutation
NOTCH1 c.3326-1 mutation
NOTCH1 c.3614 mutation
NOTCH1 c.4115 mutation
NOTCH1 c.4325del mutation
NOTCH1 c.4361 mutation
NOTCH1 c.4432 mutation
NOTCH1 c.4572_4578 mutation
NOTCH1 c.4625 mutation
NOTCH1 c.4687 mutation
NOTCH1 c.4712_4729 mutation
NOTCH1 c.5071 mutation
NOTCH1 c.5167+5 mutation
NOTCH1 c.5296_5299del mutation
NOTCH1 c.5361 mutation
NOTCH1 c.5882 mutation
NOTCH1 c.5990 mutation
NOTCH1 c.6063_6075del mutation
NOTCH1 c.6311 mutation
NOTCH1 c.6317 mutation
NOTCH1 c.842 mutation
NOTCH1 c.961 mutation
NOTCH1 c.962 mutation
NOTCH1 C1133Y mutation
NOTCH1 CNV
NOTCH1 frame-shift mutation
NOTCH1 missense mutation
NOTCH1 mutation
NOTCH1 mutation (p.A465T)
NOTCH1 nonsense mutation
NOTCH1 SNV
NOTCH1 splice-site mutation
NOTCH1 truncation mutation
NOTCH2NLR mutation
NOTCH3 mutation
Novel MDM2 splice variants
NPY hypermethylation
NRAS CNV
NRAS mutation
NSD1 mutation
NSUN2 amplification
NSUN3 amplification
NSUN4 amplification
NTM CpG islands methylation
NTM hypermethylation
NTRK3 promoter methylation
NUP37 mutation
NUP54 mutation
OCLN methylation
OPCML methylation
ORAOV1 (LTO1) CNV
OSR1 promoter methylation
OSR2 mutation
OTX2 mutation
p14ARF hypermethylation
p14ARF methylation
p14ARF mutation
p14ARF mutations
p15 methylation
p15INK4B methylation
p16 gene promoter methylation
p16 genes methylation
p16 methylation
p16 mutation
p16 mutations
p16 promoter hypermethylation
p16 promoter methylation
p16INK4A deletion
p16INK4A hypermethylation
p16INK4A methylation
P16INK4A promoter methylation
p21 methylation
P21/WAF1 C98A mutation
p21Waf1 hypermethylation
p27 mutation
P27KIP1(CDKN1B) hypermethylation
P4501A1 mutation
PAH loss
PAK4 promoter methylation
PARP15 CpG islands methylation
PARP15 hypermethylation
PAX1 hypermethylation
PAX1 methylation
PAX5 CNV
PAX5 methylation
PAX5 promoter methylation
PAX6 loss
PAX6 methylation
PAX6 promoter methylation
PAXBP1 mutation
PCDH11X amplification
PCDH11X SNV
PDGFRA mutation
PDHA1 CNV
PDHA1 mutation
PDHB CNV
PDHB mutation
PDLIM5 deletion
PFGFRA CNV
PI3 hypomethyaltion
PIGC mutation
PIK2CA mutation
PIK3C2A amplification
PIK3CA amplification
PIK3CA CNV
PIK3CA frame-shift mutation
PIK3CA gain
PIK3CA missense mutation
PIK3CA mutation
PIK3CA truncation mutation
PIK3CB amplification
PIK3IP1 amplification
PIK3R1 amplification
PIK3R1 mutation
PIK3R3 amplification
PIK3R4 amplification
PIK3R5 amplification
PIK3R5 methylation
PIK3R6 amplification
PLEC amplification
PLEC SNV
PLEKHA4 mutation
PLXNA1 mutation
PMP22 loss
Point mutation of TP53
POLR3E methylation
PPARG mutation
PPP1R26 mutation
PPP4R1 mutation
PRMT5 CNV
Pro72 variant of TP53
Promoter methylation of DLEC1
PRRC2B mutation
PTEN allelic loss
PTEN hypermethylation
PTEN methylation
PTEN mutation
PTGIS promoter methylation
PTHLH hypomethyaltion
PTPN22 hypomethylation
PTPN6 (SHP1) hypermethylation
PYCARD CNV
RAB3GAP1 mutation
RAC1 mutation
RAD17 mutation
RAF1 methylation
RAF1 mutation
RARB CNV
RARB methylation
RASA1 mutation
RASA1 SNV
RASSF1A methylation
RASSF1A promoter methylation
RASSF2 methylation
RASSF2A methylation
RASSF4 hypomethylation
RB1 CNV
RB1 hypermethylation
RB1 mutation
RBPJ amplification
REL deletion
RELA amplification
RELA promoter methylation
RHEB mutation
RHOA deletion
Ribosomal DNA promoter methylation
RICTOR mutation
RIF1 mutation
RNF112 mutation
RNF227 methylation
RNF36 gain
ROS1 mutation
rs10183087
rs1042073
rs1045411
rs1045485
rs1047768
rs1047840
rs10491121
rs10497520
rs10499563
rs1051208
rs1051730
rs1062484
rs10757278
rs1078305
rs10817938
rs10818524
rs10865710
rs10865941
rs10936599
rs10971638
rs11076161
rs11160608
rs1126478
rs1130214
rs1130233
rs1136410
rs1137101
rs1137282
rs1138272
rs1143627
rs1143634
rs11556218
rs11556620
rs11615
rs1169288/0c.79A>C
rs1175544
rs11902171
rs1194338
rs11977021
rs12197797
rs12220909/miR-4293
rs1229984
rs12431658
rs12463674
rs12465459
rs12487715
rs12515548
rs12594
rs130067
rs13016963
rs13181
rs1360485
rs139994842
rs1412115
rs1412125
rs1540354
rs1570360
rs1607237
rs1610216
rs1634507
rs16835904
rs16893344
rs16904097
rs16944
rs1695
rs16969968
rs17561
rs1760944
rs17655
rs17664
rs17849079
rs1799724
rs1799782
rs1799793
rs1799964
rs1800629
rs1800630
rs1800734
rs1800795
rs1800796
rs1800870
rs1800871
rs1800872
rs1800894
rs1800895
rs1800896
rs1800925
rs1800975
rs1801131
rs1801133
rs1801270
rs1804450
rs181206
rs1862513
rs187084
rs187238
rs1942348
rs1946518
rs1966265
rs1990172
rs199504848/0c.2726G>A
rs200699541
rs2010963
rs2011077
rs201174576
rs202133782
rs2040639
rs2042004
rs2042996
rs2054096
rs2067051
rs2069762
rs2069763
rs2070874
rs2073495
rs2094258
rs2107425
rs2110385
rs2131906
rs217727
rs2227306
rs2227983
rs2228000
rs2228001
rs2233678
rs2233679
rs2239692
rs2243250
rs2244492
rs2249825
rs2251375
rs2267029
rs2274223
rs2275913
rs2279744
rs2281511
rs2292884
rs2294008
rs2302427
rs2303838
rs2305421
rs231775
rs2397084
rs2494732
rs25487
rs25487/0c.1196A>G
rs2600322
rs2606731
rs26279
rs2675
rs267608078/0c.3261del
rs2677764
rs2686742
rs2699887
rs2735971
rs2736098
rs2736100
rs2779359
rs2808668
rs28382575
rs2839698
rs2839701
rs28397695
rs28707473
rs2910164
rs2929970
rs2929973
rs2943773
rs2977530
rs2977537
rs3024273
rs3025039
rs309
rs3095007
rs3181100
rs3181113
rs3200401
rs3212227
rs3212948
rs3212961
rs3212986
rs3219090
rs3219175
rs3219489
rs346074
rs346076
rs34827868
rs351855
rs35560700
rs361525
rs367543043/0c.1544dup
rs3730358
rs3732183
rs3735615
rs3741384
rs3742305
rs3745367
rs3746444
rs3746444/miR499a
rs3748067
rs3757441
rs3765097
rs3765524
rs3775290
rs3775291
rs3783355
rs3803300
rs3809865
rs3820216
rs3834129
rs383902
rs3853839
rs3856806
rs397507178/0c.2165del
rs402710
rs4072037
rs4073
rs4081134
rs41277434
rs4144331
rs4378559
rs4404254
rs4553808
rs45549733
rs4637321
rs4705342/miR-143
rs4721888
rs4730153
rs4778889
rs4801078
rs4855094
rs4880
rs4880792
rs4906024
rs4975596
rs4977574
rs4986790
rs5030486
rs514049
rs531564/miR-124
rs568408
rs5743823
rs5746136
rs587779737/0c.126_128del
rs61330082
rs61869016
rs619586
rs62514004
rs6420545
rs6443624
rs653765
rs6597947
rs6667260/c.1222 T>G
rs6667260/c.1432 T>C
rs671
rs6853
rs6950683
rs699947
rs708274
rs708776/0c.1655C>A
rs712
rs7191779
rs7255437
rs735482
rs7372209
rs738791
rs738792
rs7408174
rs743554
rs7481521
rs751402
rs753526329/0c.271_273del
rs758487568/0c.4337_4338del
rs761761205/0c.1102del
rs763780
rs7649970
rs7651265
rs7708357
rs7736074
rs7853346
rs7869402
rs7927113
rs79512956/0c.2510C>G
rs8052334
rs8052394
rs8170
rs833061
rs8510
rs861539
rs865005
rs873601
rs901865
rs915956
rs9211
rs937283
rs9636089
rs964372
rs9651495
rs971074
rs975263
rs984204115 (rs774490485)/0c.7493_7495del
rs9904341
RSRP1 mutation
RUNX1 hypomethylation
RUNX3 methylation
RYR2 mutation
SAMD9L mutation
SEMA3B promoter methylation
SERPINE1 gain
SFN methylation
SFRP1 methylation
SFRP2 methylation
SFRP2 promoter methylation
SFRP5 methylation
SHANK2 CNV
SHANK2 methylation
SHISA9 cg02860732 methylation
SHISA9 cg04342955 methylation
SIAH2 mutation
Single copy CNV of GSTM1
Single nucleotide polymorphisms in promoter regions of MMP-1
Single nucleotide polymorphisms in promoter regions of MMP-3
SLC1A1 CNV
SLC31A1 CNV
SLC35G5 mutation
SLC5A12 mutation
SLITRK5 promoter methylation
SMAD4 amplification
SMAD4 CNV
SMAD4 deletion
SMAD4 mutation
SMARCA2 CNV
SMARCA5 mutation
SMARCB1 mutation
SMC1A mutation
SMPD3 methylation
SMPD3 silencing
SNCG methylation
SOCS1 hypermethylation
SOX1 methylation
SOX17 hypermethylation
SOX17 promoter hypermethylation
SOX8 methylation
SPP1 hypomethyaltion
STK11 CNV
STK11 gain
STK11 mutation
STOML1 mutation
SUGP2 mutation
SULT1A1 haplotypes
SYNE1 mutation
SYNGR1 promoter methylation
SYTL2 methylation
TAF1L mutation
TAL1 hypermethylation
Tapasin promoter methylation
TCF8 deletion
TERT CpG islands methylation
TERT hypomethylation
TERT mutation
TET2 mutation
TET3 amplification
TF promoter methylation
TFPI-2 hypermethylation
TFPI2 methylation
TFPI2 promoter hypermethylation
TGFBR2 receptor II mutation (I227T/N236D)
TGM-3 promotermethylation
TGM3 methylation
THRAP3 deletion
THRAP3 mutation
TIMP-2 -418 G/C polymorphism
TIPARP gain
TLR1 hypomethylation
TMEFF2 methylation
TNF-(-308) G/A polymorphisms
TNF-238 polymorphisms
TNF-a polymorphism
TNF-alpha (-308G/A)
TNF-beta (+252G/A)
TNFa hypomethylation
TNFSF11 hypomethylation
TP53 (Pro72Arg) polymorphism
TP53 amplification or duplication
TP53 CNV
TP53 codon 72 polymorphism
TP53 DNA-binding domain missense mutations
TP53 gene codon 72 (P53c72) mutation
TP53 mutant R248Q
TP53 mutation
TP53 point mutation
TP53 promoter hypermethylation
TP53 SNV
TP53A161GX truncation mutation
TP53A276X truncation mutation
TP53A353V
TP53C176F
TP53C176Y
TP53C229* truncation mutation
TP53C275Y
TP53E17GX truncation mutation
TP53E286K
TP53E336EX truncation mutation
TP53E343* truncation mutation
TP53G244D
TP53G245S
TP53G266* truncation mutation
TP53H193R
TP53I195X truncation mutation
TP53M237I
TP53P151S
TP53P177L
TP53Q331* truncation mutation
TP53R110L
TP53R175H
TP53R175H GOF mutation
TP53R213* truncation mutation
TP53R248L
TP53R248PX truncation mutation
TP53R248W
TP53R249S
TP53R267P
TP53R273C
TP53R280K
TP53R282W
TP53R306L
TP53R342* truncation mutation
TP53T125M
TP53T18X truncation mutation
TP53T284X truncation mutation
TP53V122X truncation mutation
TP53V216L
TP53V31I
TP53Y163C
TP53Y163N
TP53Y205* truncation mutation
TP53Y205C
TP53Y220C
TP53Y236* truncation mutation
TP63 amplification
TP63 gain
TP63 mutation
TP73 CNV
TP73 hypermethylation
TP73 methylation
TPW91* truncation mutation
TRAF6 amplification
TRII mutation
Trisomy/Polysomy of chromosome 17
TRMT61A CNV
TRMT61B CNV
TRPA1 methylation
TRPM3 mutation
TSC promoter methylation
TTF1 mutation
TTK mutation
TUB methylation
TUSC3 deletion
TYMS 2R3R genotype
TYMS 3R3R genotype
UBAP2L mutation
UBASH3B mutation
UHRF2 CNV
UNC13C mutation
USP1 mutation
USP8 mutation
USP9X mutation
VDR Taq I polymorphism
VEGF -460 C/T polymorphism
VEGF 936 mutation
VEGF+405 G/C
VEGF+936 C/T
VEGF-1154 G/A
VEGF-2578 C/A
VEGF-460 C/T
VHL CNV
VHL mutation
VPS35 mutation
VRTN mutation
WDR86 methylation
Whole genome duplication (WGD)
WISP1 hypomethylation
WIZ mutation
WRN hypermethylation
WT1 hypermethylation
WT1 methylation
WT1 promoter methylation
XPC Lys939Gln polymorphism
XPC PAT polymorphism
XPD exon 6 polymorphism
XPD Lys751Gln polymorphism
XRCC1 Arg194Trp polymorphism
XRCC1 Arg399Gln polymorphism
XRCC3 T241 M polymorphisms
XRCC3 Thr241Met polymorphism
YBX1 amplification
YTHDC1 CNV
YTHDF1 CNV
YTHDF2 CNV
YTHDF3 mutation
ZAP70 CpG islands methylation
ZAP70 hypermethylation
ZAP70 promoter methylation
ZFAND5 mutation
ZFHX4 mutation
ZFYVE26 methylation
ZNF154 hypermethylation
ZNF266 mutation
ZNF333 mutation
ZNF570 methylation
ZNF577 hypermethylation
ZNF582 hypermethylation
ZNF582 methylation
ZNF677 promoter methylation
ZPBP mutation
ZSCAN31 hypermethylation
ZSCAN5C mutation
Location
All Locations
Argentina
Brazil
Canada
China
China and Denmark
China and USA
CoHANDs
Colombia
Czech
Denmark
Egypt
ENA
Europe, Japan and USA
GDC and TCGA
GEO
Germany
Greece
Greece and Germany
India
India, Indigen, Malaysia and Chinese
Iran
Ireland
Israel
Italy
Japan
Korea
Korea and USA
Malaysia
Malaysia and USA
Netherlands
Pakistan
Poland
Portugal
Republic of Korea
Romania
Saudi Arabia
Serbia
SHNCI and TCGA
Slovenia
Spain
TCGA
TCGA and GEO
Thailand
Turkey
UK
UMCG
USA
Gene Symbol
All Genes
5hmC
5mC
ABCA2
ABCA5
ABCB1
ABO
ACTA1
ACTN1
ACTN2
ADAM10
ADAM32
ADGRB3
ADGRD1
ADGRE3
ADGRG1
ADH1B
ADH1C
ADH7
AHCTF1
AIM2
AJAP1
AKAP9
AKR7L
AKT1
ALDH2
ALDOC
ALKBH1
ALKBH3
ALYREF
ANAPC2
ANKRA2
ANO1
AP5M1
APAF1
APBA1
APBA2
APC
APEX1
AR
ARHGAP21
ARHGEF39
ARID1A
ARID2
ASAP1
ASXL1
ATM
ATP13A3
ATP2A2
ATP7A
ATP7B
AXIN1
BABAM1
BAG1
BCAP31
BCL6
BCR
BECN1
BEX1
BEX4
BIRC5
BIRC6
BLM
BMI1
BRAF
BRCA1
BRCA2
BRD4
BRINP1
BRINP2
BSG
CA3
CACNA1H
CADM1
CALCA
CAP2
CAPN7
CASD1
CASP8
CASR
CCDC26
CCDN1
CCHCR1
CCL4
CCN4
CCND1
CCND2
CCNJL
CCR2
CCR5
CD22
CD24
CD28
CD80
CDC27
CDH1
CDH13
CDH19
CDH2
CDK6
CDKN1A
CDKN1B
CDKN2A
CDKN2B
CDKN2B-AS1
CDSN
CEACAM1
CELSR1
CELSR3
CENPV
CGAS
CHD1
CHD8
CHFR
CHRDL1
CHRNA3
CHRNA5
CHST15
CHUK
CIR1
CKAP2L
CKMT1B
CKMT2
CLDN1
CLK1
CLPTM1L
CLTA
CLTCL1
CMTM3
COL1A1
COL5A2
COL6A4P1
COQ8B
COX7A1
CPNE1
CRB1
CREBBP
CSMD1
CSMD2
CSMD3
CTCF
CTDSP1
CTLA4
CTNNB1
CTTN
CTTNBP2NL
CXCL8
CYGB
CYP1A1
CYP26B1
CYP2E1
DACT1
DACT2
DAPK1
DBT
DCC
DDAH2
DDOST
DDR1
DDX11
DDX3X
DDX42
DEFB1
DKK2
DKK4
DLAT
DLD
DLST
DMD
DMRT1
DMRT3
DNAH6
DNAJC2
DNMT3B
DNTTIP2
DOCK1
DPH1
DROSHA
DSPP
DUSP1
EDNRB
EGFR
EIF2AK2
EIF4E3
ELAVL1
EPB41L3
EPCAM
EPHA2
EPHA5
EPHX3
ERBB2
ERBB4
ERCC1
ERCC2
ERCC5
ERMP1
ERRFI1
ESR1
EXO1
EYA4
EZH2
FADD
FANCA
FAS
FAT1
FAT2
FAT4
FBXO3
FBXW7
FDX1
FGF10
FGF19
FGF3
FGF4
FGFR1
FGFR2
FGFR3
FGFR4
FHIT
FLI1
FLT1
FLT3
FLT4
FOSL1
FOXA2
FOXC1
FOXD4
FOXK1
FOXL2
FRS2
GABBR1
GATA4
GATA5
GATAD2B
GBP1
GCSH
GDF15
GDF5
GFRA1
GJA1
GNAI3
GNAQ
GP1BB
GPR29
GPR87
GRM3
GRXCR1
GSN
GSTA1
GSTM1
GSTM3
GSTP1
GSTT1
GTF2H5
H19
HDAC9
HGFAC
HIF1A
HLA-DPB1
HMGB1
HMOX1
HNF1A
HNRNPH1
HORMAD2
HOXA11
HOXA9
HOXB13
HOXB4
HOXC4
HOXD10
HOXD3
HOXD4
HRAS
HRH1
HS3ST2
HTR1B
HTR2C
ICOS
IDH1
IDO1
IFNG
IGF2R
IL10
IL12A
IL12B
IL13
IL16
IL17A
IL17F
IL18
IL1A
IL1B
IL2
IL27
IL33
IL4
IL6
ING5
INTS9
IQSEC1
IRX4
ISL1
ITGA3
ITGA4
ITGA6
ITGAV
ITGB3
ITGB4
ITGB5
ITPKB
IVL
JAK2
JMJD1C
KANK1
KCNG4
KDM5B
KDR
KIF11
KIF1A
KIT
KLF4
KLK3
KLLN
KMT2C
KMT2D
KRAS
KRT13
KRT4
L1TD1
LAMA1
LANCL2
LATS1
LATS2
LCN2
LDLRAD4
LDOC1
LEPR
LGR5
LHX1
LIAS
LINC-ROR
LIPT1
LOC339166
LOXL2
LRP1
LRP1B
LRP2
LRRC74A
LRRFIP1
LRRTM1
LSG1
LTA
LTF
LTO1
LXN
MACC1
MALAT1
MAP2K1
MAP2K5
MAP3K7
MAPK1
MAPK14
MCPH1
MDM2
MECOM
MEG3
MET
MGMT
MICA
MICU2
miR-124
miR-143
miR-4293
MIR10A
MIR124-1HG
MIR124-3
MIR137
MIR137HG
MIR140
MIR146A
MIR149
MIR192
MIR193A
MIR196A2
MIR200C
MIR24-1
MIR26A1
MIR296
MIR29A
MIR29C
MIR34C
MIR375
MIR4500
MIR499A
MIR769
MKI67
MLH1
MLPH
MME
MMP1
MMP11
MMP13
MMP20
MMP3
MMP9
MSH2
MSH3
MSH6
MT-CO2
MT1A
MT1B
MT1F
MT2A
MTAP
MTHFR
MTPAP
MUC1
MUC6
MUTYH
MYC
MYCL
MYD88
MYH11
MYLK
MYNN
N/A
NAB1
NAMPT
NANOG
NCOA3
NCOR1
NEAT1
NEUROD4
NF1
NFE2L2
NFIB
NFKB1
NID2
NIT1
NLGN1
NOMO1
NOP2
NOTCH1
NOTCH2
NOTCH2NLR
NOTCH3
NPY
NRAS
NRP1
NSD1
NSUN2
NSUN3
NSUN4
NTM
NTRK3
NUP37
NUP54
OCLN
OGG1
OPCML
OSR1
OSR2
OTX2
PAH
PAK4
PARP1
PARP15
PAX1
PAX5
PAX6
PAXBP1
PCDH11X
PDGFRA
PDHA1
PDHB
PDLIM5
PIGC
PIK3C2A
PIK3CA
PIK3CB
PIK3IP1
PIK3R1
PIK3R3
PIK3R4
PIK3R5
PIK3R6
PIN1
PLCE1
PLEC
PLEKHA4
PLXNA1
PMP22
POLE
POLR3E
PPARG
PPP1R26
PPP4R1
PRMT5
PROM1
PRRC2B
PSCA
PTEN
PTENP1
PTGIS
PTGS2
PTGS3
PTGS4
PTHLH
PTPN22
PTPN6
PYCARD
RAB3GAP1
RAC1
RAD17
RAD50
RAF1
RARB
RASA1
RASSF1
RASSF2
RASSF4
RB1
RB1CC1
RBPJ
RELA
RETN
RHEB
RHOA
RICTOR
RIF1
RNF112
RNF216
ROS1
RSRP1
RUNX1
RUNX3
RYR2
S100A4
SAMD9L
SCGB3A1
SEMA3B
SERPINE1
SFN
SFRP1
SFRP2
SHANK2
SHISA9
SIAH2
SLC1A1
SLC31A1
SLC35G5
SLC5A12
SLITRK5
SMAD4
SMARCA2
SMARCA5
SMARCB1
SMC1A
SMPD3
SNCG
SOCS1
SOD1
SOD2
SOD3
SOX1
SOX17
SOX8
SPINK7
SPP1
STAT5B
STK11
STOML1
SUGP2
SULT1A1
SYNE1
SYNGR1
SYTL2
TAF1L
TAL1
TERT
TET2
TET3
TF
TFPI2
TGFBR2
TGM3
THRAP3
TIMP2
TIPARP
TLR1
TLR3
TLR4
TLR6
TLR7
TLR9
TMEFF2
TMPRSS11A
TNF
TNFSF11
TP53
TP63
TP73
TRAF6
TRIM21
TRIM69
TRMT61A
TRMT61B
TRPA1
TRPM3
TSC1
TTF1
TTK
TTN
TUB
TUSC3
TWSG1
TYMS
UBAP2L
UBASH3B
UCA1
UHRF2
UNC13C
USP1
USP8
USP9X
VDR
VEGFA
VHL
VPS35
VRTN
WDR86
WGD
WIZ
WRN
WT1
XPA
XPC
XRCC1
XRCC2
XRCC3
YBX1
YTHDC1
YTHDF1
YTHDF2
YTHDF3
ZAP70
ZEB1
ZFAND5
ZFHX4
ZFYVE26
ZNF154
ZNF266
ZNF333
ZNF570
ZNF577
ZNF582
ZNF677
ZPBP
ZSCAN31
ZSCAN5C
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